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Gene name
Human disease related genes
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UMAP gene cluster
Pig tissue group category (RNA)
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Gene name
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Cancers
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Subclass
Class
Biological process
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Disease
Keyword
Chromosome
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
MT
Unmapped
X
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
Cartilage
Heart
Kidney
Large intestine
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Skin
Small intestine
Stomach 1
Upper respiratory system
Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
THE PIG ATLAS
TISSUE SPECIFIC PROTEOME
UMAP GENE CLUSTERING
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4635 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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1.
Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
na
ENSSSCG00000040525
Low tissue specificity
Detected in all
na
ENSSSCG00000040531
ENSG00000049247
Urotensin-2 precursor
Low tissue specificity
Detected in all
na
ENSSSCG00000040540
Low tissue specificity
Detected in all
na
ENSSSCG00000040545
Tissue enhanced
Detected in many
brain:
18.9
na
ENSSSCG00000040554
ENSG00000092758
Tissue enriched
Detected in some
cartilage:
366.1
na
ENSSSCG00000040558
Tissue enhanced
Detected in many
retina:
33.3
na
ENSSSCG00000040563
Low tissue specificity
Detected in many
na
ENSSSCG00000040576
Tissue enhanced
Detected in many
brain:
25.6
na
ENSSSCG00000040651
Tissue enhanced
Detected in many
large intestine:
56.1
lung:
43.6
small intestine:
40.1
upper respiratory system:
125.3
na
ENSSSCG00000040653
Group enriched
Detected in some
brain:
43.2
cornea:
35.0
na
ENSSSCG00000040661
Tissue enhanced
Detected in many
esophagus:
25.4
na
ENSSSCG00000040771
Low tissue specificity
Detected in many
na
ENSSSCG00000040778
ENSG00000170113
Tissue enriched
Detected in many
brain:
44.8
na
ENSSSCG00000040781
Tissue enhanced
Detected in many
cornea:
28.6
na
ENSSSCG00000040797
Group enriched
Detected in some
brain:
24.1
cartilage:
7.6
pineal gland:
8.7
pituitary gland:
8.9
retina:
7.2
na
ENSSSCG00000040820
ENSG00000250423
Tissue enhanced
Detected in some
cartilage:
21.0
ductus deferens:
13.8
lens:
23.2
testis:
20.9
na
ENSSSCG00000040830
Tissue enhanced
Detected in all
gallbladder:
88.2
na
ENSSSCG00000040831
Tissue enhanced
Detected in many
liver:
141.4
na
ENSSSCG00000040867
Tissue enhanced
Detected in many
brain:
27.1
dura mater:
18.2
lens:
24.0
retina:
16.9
na
ENSSSCG00000040892
Tissue enhanced
Detected in many
brain:
8.2
choroid plexus:
20.4
na
ENSSSCG00000040909
Tissue enhanced
Detected in many
brain:
35.5
male glands:
25.2
stomach:
30.6
na
ENSSSCG00000040916
Low tissue specificity
Detected in many
na
ENSSSCG00000040988
Tissue enhanced
Detected in many
brain:
46.8
male glands:
71.3
vagus nerve:
78.9
NACAD
ENSSSCG00000016733
ENSG00000136274
NAC alpha domain containing
Tissue enriched
Detected in many
brain:
42.4
NAP1L2
ENSSSCG00000012415
ENSG00000186462
Nucleosome assembly protein 1 like 2
Group enriched
Detected in some
brain:
35.0
choroid plexus:
9.8
pineal gland:
19.6
pituitary gland:
9.0
retina:
11.0
NAPB
ENSSSCG00000031219
ENSG00000125814
NSF attachment protein beta
Group enriched
Detected in many
brain:
39.5
pineal gland:
19.0
retina:
14.7
NAPSA
ENSSSCG00000003212
ENSG00000131400
Napsin A aspartic peptidase
Tissue enhanced
Detected in many
lung:
42.0
lymphoid tissue:
15.9
NAT8L
ENSSSCG00000033541
ENSG00000185818
N-acetyltransferase 8 like
Tissue enriched
Detected in some
brain:
39.9
NAV1
ENSSSCG00000010915
ENSG00000134369
Neuron navigator 1
Low tissue specificity
Detected in all
NBL1
ENSSSCG00000024669
ENSG00000158747
Neuroblastoma 1, DAN family BMP antagonist
Tissue enhanced
Detected in all
cervix:
154.2
male glands:
140.5
NCALD
ENSSSCG00000006059
ENSG00000104490
Neurocalcin-delta
Tissue enhanced
Detected in many
brain:
50.1
lens:
34.5
NCAM2
ENSSSCG00000012020
ENSG00000154654
Neural cell adhesion molecule 2
Tissue enhanced
Detected in some
brain:
40.1
pituitary gland:
10.6
retina:
7.8
NCAN
ENSSSCG00000032131
ENSG00000130287
Neurocan
Tissue enriched
Detected in some
brain:
43.4
NCBP2-AS2
ENSSSCG00000038542
ENSG00000270170
NCBP2 antisense RNA 2 (head to head)
Low tissue specificity
Detected in many
NCDN
ENSSSCG00000031786
ENSG00000020129
Neurochondrin
Group enriched
Detected in all
brain:
88.3
pineal gland:
30.1
NCF1
ENSSSCG00000007722
ENSG00000158517
Neutrophil cytosol factor 1
Tissue enhanced
Detected in many
lymphoid tissue:
34.1
NCF4
ENSSSCG00000000137
ENSG00000100365
Neutrophil cytosolic factor 4
Tissue enhanced
Detected in many
lymphoid tissue:
37.3
stomach:
29.6
NCKAP1L
ENSSSCG00000000295
ENSG00000123338
NCK associated protein 1 like
Tissue enhanced
Detected in many
lymphoid tissue:
44.7
NCMAP
ENSSSCG00000003547
ENSG00000184454
Non-compact myelin associated protein
Group enriched
Detected in many
brain:
125.9
vagus nerve:
202.2
NCS1
ENSSSCG00000039311
ENSG00000107130
Neuronal calcium sensor 1
Tissue enhanced
Detected in many
brain:
59.6
ND1
ENSSSCG00000018065
ENSG00000198888
NADH dehydrogenase subunit 1 (mitochondrion)
Tissue enhanced
Detected in all
heart:
1382.7
ND2
ENSSSCG00000018069
ENSG00000198763
NADH-ubiquinone oxidoreductase chain 2
Tissue enhanced
Detected in all
heart:
888.1
ND3
ENSSSCG00000018084
ENSG00000198840
NADH-ubiquinone oxidoreductase chain 3
Tissue enhanced
Detected in all
heart:
1339.5
ND4
ENSSSCG00000018087
ENSG00000198886
NADH-ubiquinone oxidoreductase chain 4
Tissue enhanced
Detected in all
heart:
1220.5
ND4L
ENSSSCG00000018086
ENSG00000212907
NADH-ubiquinone oxidoreductase chain 4L
Tissue enhanced
Detected in all
heart:
1287.2
ND6
ENSSSCG00000018092
ENSG00000198695
NADH-ubiquinone oxidoreductase chain 6
Tissue enhanced
Detected in all
heart:
887.1
NDE1
ENSSSCG00000040479
ENSG00000072864
NudE neurodevelopment protein 1
Low tissue specificity
Detected in all
NDNF
ENSSSCG00000029260
ENSG00000173376
Neuron derived neurotrophic factor
Tissue enhanced
Detected in many
choroid plexus:
43.3
NDRG1
ENSSSCG00000005944
ENSG00000104419
N-myc downstream regulated 1
Tissue enhanced
Detected in all
lens:
209.7
NDRG4
ENSSSCG00000021911
ENSG00000103034
NDRG family member 4
Tissue enhanced
Detected in many
brain:
86.8
cervix:
82.2
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