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Human disease related genes
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Keyword
Chromosome
1
2
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5
6
7
8
9
10
11
12
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14
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18
MT
Unmapped
X
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
Cartilage
Heart
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Lymphoid tissue
Male glands
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Mouth
Skin
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Stomach 1
Upper respiratory system
Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
THE PIG ATLAS
TISSUE SPECIFIC PROTEOME
UMAP GENE CLUSTERING
BIOMEDICAL RESEARCH
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4635 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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1.
Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
FRAS1
ENSSSCG00000008991
ENSG00000138759
Fraser extracellular matrix complex subunit 1
Tissue enhanced
Detected in many
heart:
40.1
FREM1
ENSSSCG00000039025
ENSG00000164946
FRAS1 related extracellular matrix 1
Tissue enhanced
Detected in many
choroid plexus:
30.0
kidney:
39.0
FRMD1
ENSSSCG00000004017
ENSG00000153303
FERM domain containing 1
Group enriched
Detected in many
gallbladder:
17.9
kidney:
49.5
testis:
53.6
FRMD4A
ENSSSCG00000011056
ENSG00000151474
FERM domain containing 4A
Low tissue specificity
Detected in all
FRMD4B
ENSSSCG00000011511
ENSG00000114541
FERM domain containing 4B
Low tissue specificity
Detected in all
FRMD5
ENSSSCG00000004694
ENSG00000171877
FERM domain containing 5
Tissue enhanced
Detected in many
brain:
33.6
ductus deferens:
26.5
epididymis:
22.0
male glands:
32.1
FRMD6
ENSSSCG00000005027
ENSG00000139926
FERM domain containing 6
Low tissue specificity
Detected in all
FRMD7
ENSSSCG00000023618
ENSG00000165694
FERM domain containing 7
Tissue enhanced
Detected in some
brain:
29.2
ductus deferens:
19.7
FRMPD1
ENSSSCG00000005352
ENSG00000070601
FERM and PDZ domain containing 1
Tissue enriched
Detected in some
retina:
50.7
FRMPD2
ENSSSCG00000010379
ENSG00000170324
FERM and PDZ domain containing 2
Tissue enhanced
Detected in some
fallopian tube:
22.7
pineal gland:
40.3
retina:
29.6
FRMPD3
ENSSSCG00000012561
ENSG00000147234
FERM and PDZ domain containing 3
Tissue enriched
Detected in some
brain:
15.2
FRMPD4
ENSSSCG00000030877
ENSG00000169933
FERM and PDZ domain containing 4
Tissue enriched
Detected in many
choroid plexus:
70.0
FRRS1L
ENSSSCG00000038824
ENSG00000260230
Ferric chelate reductase 1 like
Tissue enriched
Detected in many
brain:
27.5
FRY
ENSSSCG00000009338
ENSG00000073910
FRY microtubule binding protein
Tissue enhanced
Detected in all
cartilage:
79.0
FSCN1
ENSSSCG00000007586
ENSG00000075618
Fascin
Tissue enhanced
Detected in many
brain:
55.1
FSCN2
ENSSSCG00000026155
ENSG00000186765
Fascin actin-bundling protein 2, retinal
Tissue enhanced
Detected in many
choroid plexus:
22.9
pineal gland:
21.6
retina:
57.2
FSD1
ENSSSCG00000013505
ENSG00000105255
Fibronectin type III and SPRY domain containing 1
Tissue enhanced
Detected in many
brain:
15.4
FSHB
ENSSSCG00000013328
ENSG00000131808
Follitropin subunit beta
Tissue enriched
Detected in many
pituitary gland:
353.5
FSIP1
ENSSSCG00000040418
ENSG00000150667
Fibrous sheath interacting protein 1
Tissue enhanced
Detected in many
choroid plexus:
12.4
fallopian tube:
18.2
testis:
12.0
FSTL1
ENSSSCG00000039426
ENSG00000163430
Follistatin like 1
Tissue enhanced
Detected in all
mesothelial tissue:
125.1
FSTL3
ENSSSCG00000037102
ENSG00000070404
Follistatin like 3
Tissue enhanced
Detected in many
ovary:
73.2
FSTL4
ENSSSCG00000014293
ENSG00000053108
Follistatin like 4
Tissue enhanced
Detected in many
adrenal gland:
36.7
brain:
13.5
FSTL5
ENSSSCG00000027183
ENSG00000168843
Follistatin like 5
Group enriched
Detected in some
brain:
46.6
pituitary gland:
12.4
retina:
24.7
FTL
ENSSSCG00000003153
ENSG00000087086
Ferritin light chain
Tissue enhanced
Detected in all
lens:
546.5
FUCA2
ENSSSCG00000004133
ENSG00000001036
Alpha-L-fucosidase 2
Low tissue specificity
Detected in all
FUT10
ENSSSCG00000038178
ENSG00000172728
Fucosyltransferase 10
Low tissue specificity
Detected in all
FUT4
ENSSSCG00000014958
ENSG00000196371
Fucosyltransferase 4
Tissue enhanced
Detected in many
stomach:
57.6
FUT9
ENSSSCG00000004338
ENSG00000172461
Fucosyltransferase 9
Tissue enhanced
Detected in some
brain:
32.7
pineal gland:
12.2
retina:
7.2
FXYD2
ENSSSCG00000015084
ENSG00000137731
Sodium/potassium-transporting ATPase subunit gamma
Tissue enriched
Detected in some
kidney:
108.6
FXYD6
ENSSSCG00000015083
ENSG00000137726
FXYD domain containing ion transport regulator 6
Low tissue specificity
Detected in all
FZD1
ENSSSCG00000036436
ENSG00000157240
Frizzled class receptor 1
Low tissue specificity
Detected in many
FZD10
ENSSSCG00000009751
ENSG00000111432
Frizzled class receptor 10
Tissue enhanced
Detected in many
pineal gland:
20.1
skin:
20.3
FZD2
ENSSSCG00000029838
ENSG00000180340
Frizzled-2 precursor
Tissue enhanced
Detected in many
vagus nerve:
45.7
FZD5
ENSSSCG00000016140
ENSG00000163251
Frizzled class receptor 5
Tissue enhanced
Detected in all
large intestine:
44.9
liver:
40.2
FZD7
ENSSSCG00000016111
ENSG00000155760
Frizzled class receptor 7
Tissue enhanced
Detected in all
choroid plexus:
52.3
FZD8
ENSSSCG00000033001
ENSG00000177283
Frizzled class receptor 8
Tissue enhanced
Detected in many
cartilage:
88.3
G0S2
ENSSSCG00000015617
ENSG00000123689
G0/G1 switch protein 2
Tissue enhanced
Detected in many
bone marrow:
44.5
liver:
48.4
GAB1
ENSSSCG00000009048
ENSG00000109458
GRB2 associated binding protein 1
Tissue enhanced
Detected in all
brain:
93.3
GABBR1
ENSSSCG00000001242
ENSG00000204681
Gamma-aminobutyric acid type B receptor subunit 1 precursor
Tissue enhanced
Detected in all
brain:
74.5
GABBR2
ENSSSCG00000027558
ENSG00000136928
Gamma-aminobutyric acid type B receptor subunit 2
Tissue enriched
Detected in some
brain:
44.5
GABRA1
ENSSSCG00000023661
ENSG00000022355
Gamma-aminobutyric acid type A receptor alpha1 subunit
Tissue enhanced
Detected in some
brain:
51.1
pineal gland:
20.7
retina:
12.0
GABRA2
ENSSSCG00000028922
ENSG00000151834
Gamma-aminobutyric acid type A receptor alpha2 subunit
Tissue enriched
Detected in some
brain:
50.1
GABRA3
ENSSSCG00000025708
ENSG00000011677
Gamma-aminobutyric acid type A receptor alpha3 subunit
Tissue enriched
Detected in some
brain:
28.9
GABRA4
ENSSSCG00000030515
ENSG00000109158
Gamma-aminobutyric acid type A receptor alpha4 subunit
Tissue enriched
Detected in some
brain:
34.0
GABRA5
ENSSSCG00000004827
ENSG00000186297
Gamma-aminobutyric acid type A receptor alpha5 subunit
Tissue enriched
Detected in some
brain:
41.3
GABRA6
ENSSSCG00000017027
ENSG00000145863
Gamma-aminobutyric acid type A receptor alpha6 subunit
Tissue enriched
Detected in some
brain:
67.3
GABRB1
ENSSSCG00000035621
ENSG00000163288
Gamma-aminobutyric acid type A receptor beta1 subunit
Tissue enhanced
Detected in some
brain:
25.8
epididymis:
11.7
GABRB2
ENSSSCG00000033558
ENSG00000145864
Gamma-aminobutyric acid type A receptor beta2 subunit
Tissue enriched
Detected in some
brain:
55.1
GABRB3
ENSSSCG00000038547
ENSG00000166206
Gamma-aminobutyric acid type A receptor beta3 subunit
Group enriched
Detected in some
brain:
33.5
pineal gland:
16.5
pituitary gland:
18.3
retina:
11.4
GABRE
ENSSSCG00000012754
ENSG00000102287
Gamma-aminobutyric acid type A receptor epsilon subunit
Group enriched
Detected in some
adipose tissue:
13.3
brain:
31.4
synovial tissue:
33.7
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