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UMAP gene cluster
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Keyword
Chromosome
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
MT
Unmapped
X
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
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Mouth
Skin
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Stomach 1
Upper respiratory system
Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
THE PIG ATLAS
TISSUE SPECIFIC PROTEOME
UMAP GENE CLUSTERING
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4635 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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1.
Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
GABRG1
ENSSSCG00000008809
ENSG00000163285
Gamma-aminobutyric acid type A receptor gamma1 subunit
Group enriched
Detected in some
brain:
38.8
pituitary gland:
11.0
GABRG2
ENSSSCG00000017025
ENSG00000113327
Gamma-aminobutyric acid type A receptor gamma2 subunit
Tissue enhanced
Detected in some
brain:
38.1
pineal gland:
15.9
pituitary gland:
9.1
retina:
10.5
GABRG3
ENSSSCG00000035584
ENSG00000182256
Gamma-aminobutyric acid type A receptor gamma3 subunit
Tissue enhanced
Detected in some
brain:
17.5
cornea:
10.3
thyroid gland:
7.7
GABRQ
ENSSSCG00000012755
ENSG00000268089
Gamma-aminobutyric acid type A receptor theta subunit
Tissue enriched
Detected in some
brain:
26.4
GABRR2
ENSSSCG00000024249
ENSG00000111886
Gamma-aminobutyric acid type A receptor rho2 subunit
Tissue enriched
Detected in some
retina:
66.0
GAD1
ENSSSCG00000022233
ENSG00000128683
Glutamate decarboxylase 1
Tissue enriched
Detected in some
brain:
131.0
GAD2
ENSSSCG00000011060
ENSG00000136750
Glutamate decarboxylase 2
Group enriched
Detected in some
brain:
41.7
retina:
13.6
GADD45B
ENSSSCG00000022689
ENSG00000099860
Growth arrest and DNA damage inducible beta
Low tissue specificity
Detected in all
GADD45G
ENSSSCG00000035249
ENSG00000130222
Growth arrest and DNA damage-inducible protein GADD45 gamma
Tissue enhanced
Detected in many
gallbladder:
38.0
GAL3ST1
ENSSSCG00000010009
ENSG00000128242
Galactosylceramide sulfotransferase
Tissue enhanced
Detected in many
brain:
27.1
kidney:
20.4
vagus nerve:
23.2
GAL3ST3
ENSSSCG00000028015
ENSG00000175229
Galactose-3-O-sulfotransferase 3
Tissue enhanced
Detected in many
brain:
13.3
epididymis:
15.4
mesothelial tissue:
16.8
GALNT12
ENSSSCG00000005379
ENSG00000119514
Polypeptide N-acetylgalactosaminyltransferase 12
Tissue enhanced
Detected in many
male glands:
101.5
stomach:
29.1
GALNT13
ENSSSCG00000022671
ENSG00000144278
Polypeptide N-acetylgalactosaminyltransferase 13
Group enriched
Detected in many
brain:
36.2
pineal gland:
17.8
pituitary gland:
23.4
retina:
17.7
synovial tissue:
11.8
GALNT15
ENSSSCG00000011195
ENSG00000131386
Polypeptide N-acetylgalactosaminyltransferase 15 precursor
Tissue enhanced
Detected in all
cartilage:
57.6
penis:
38.6
GALNT16
ENSSSCG00000002306
ENSG00000100626
Polypeptide N-acetylgalactosaminyltransferase 16
Tissue enhanced
Detected in many
adipose tissue:
31.6
GALNT18
ENSSSCG00000013403
ENSG00000110328
Polypeptide N-acetylgalactosaminyltransferase 18
Tissue enriched
Detected in many
cartilage:
84.5
GALNT3
ENSSSCG00000015907
ENSG00000115339
Polypeptide N-acetylgalactosaminyltransferase 3
Tissue enhanced
Detected in many
male glands:
44.6
testis:
29.6
GALNT6
ENSSSCG00000026890
ENSG00000139629
Polypeptide N-acetylgalactosaminyltransferase 6
Tissue enhanced
Detected in many
esophagus:
50.7
male glands:
89.3
salivary gland:
53.5
GALNT7
ENSSSCG00000009705
ENSG00000109586
Polypeptide N-acetylgalactosaminyltransferase 7
Tissue enhanced
Detected in many
small intestine:
42.5
stomach:
42.4
GALNT9
ENSSSCG00000009738
ENSG00000182870
Polypeptide N-acetylgalactosaminyltransferase 9
Group enriched
Detected in some
brain:
25.4
cervix:
16.7
endometrium:
15.4
GALNTL5
ENSSSCG00000016431
ENSG00000106648
Polypeptide N-acetylgalactosaminyltransferase like 5
Tissue enriched
Detected in many
testis:
63.6
GALNTL6
ENSSSCG00000021805
ENSG00000174473
Polypeptide N-acetylgalactosaminyltransferase like 6
Group enriched
Detected in some
brain:
16.2
pituitary gland:
5.2
retina:
6.9
GALP
ENSSSCG00000003318
ENSG00000197487
Galanin-like peptide isoform 2 precursor
Tissue enhanced
Detected in many
brain:
18.9
liver:
33.8
vagus nerve:
25.7
GALR1
ENSSSCG00000036984
ENSG00000166573
Galanin receptor 1
Tissue enhanced
Detected in many
choroid plexus:
23.4
urinary bladder:
19.0
GAMT
ENSSSCG00000023142
ENSG00000130005
Guanidinoacetate N-methyltransferase
Tissue enriched
Detected in many
liver:
108.3
GAP43
ENSSSCG00000031244
ENSG00000172020
Neuromodulin
Tissue enriched
Detected in many
brain:
43.8
GARNL3
ENSSSCG00000005609
ENSG00000136895
GTPase activating Rap/RanGAP domain like 3
Tissue enhanced
Detected in many
brain:
20.6
liver:
30.3
salivary gland:
21.8
GAS2
ENSSSCG00000031940
ENSG00000148935
Growth arrest specific 2
Tissue enhanced
Detected in many
brain:
24.3
liver:
36.3
GAS2L1
ENSSSCG00000025564
ENSG00000185340
GAS2-like protein 1
Low tissue specificity
Detected in all
GAS2L3
ENSSSCG00000000874
ENSG00000139354
Growth arrest specific 2 like 3
Tissue enriched
Detected in all
vagus nerve:
70.2
GAS6
ENSSSCG00000009565
ENSG00000183087
Growth arrest-specific protein 6 precursor
Low tissue specificity
Detected in many
GAS7
ENSSSCG00000039056
ENSG00000007237
Growth arrest specific 7
Tissue enhanced
Detected in all
vagus nerve:
87.1
GATA3
ENSSSCG00000011125
ENSG00000107485
Trans-acting T-cell-specific transcription factor GATA-3
Tissue enhanced
Detected in many
kidney:
50.6
male glands:
129.9
skin:
97.0
urinary bladder:
53.3
GBX2
ENSSSCG00000016319
ENSG00000168505
Gastrulation brain homeobox 2
Tissue enriched
Detected in single
brain:
13.5
GCA
ENSSSCG00000027472
ENSG00000115271
Grancalcin
Tissue enhanced
Detected in many
brain:
37.0
GCG
ENSSSCG00000015895
ENSG00000115263
Glucagon Glicentin Glicentin-related polypeptide Oxyntomodulin Glucagon Glucagon-like peptide 1 Glucagon-like peptide 1(7-37) Glucagon-like peptide 1(7-36) Glucagon-like peptide 2
Tissue enhanced
Detected in some
brain:
7.9
large intestine:
31.2
small intestine:
7.2
vagus nerve:
9.5
GCH1
ENSSSCG00000035715
ENSG00000131979
GTP cyclohydrolase 1
Tissue enhanced
Detected in all
ovary:
25.6
pineal gland:
29.0
GCLC
ENSSSCG00000001488
ENSG00000001084
Glutamate-cysteine ligase catalytic subunit
Tissue enhanced
Detected in all
lens:
59.0
GDAP1L1
ENSSSCG00000007373
ENSG00000124194
Ganglioside induced differentiation associated protein 1 like 1
Tissue enhanced
Detected in all
brain:
24.6
GDF10
ENSSSCG00000010376
ENSG00000266524
Growth differentiation factor 10
Tissue enhanced
Detected in many
cartilage:
40.2
dura mater:
14.4
synovial tissue:
32.4
GDF11
ENSSSCG00000000363
ENSG00000135414
Growth/differentiation factor 11 precursor
Tissue enriched
Detected in many
brain:
58.1
GDPD5
ENSSSCG00000014853
ENSG00000158555
Glycerophosphodiester phosphodiesterase domain containing 5
Low tissue specificity
Detected in all
GEM
ENSSSCG00000006105
ENSG00000164949
GTP binding protein overexpressed in skeletal muscle
Tissue enhanced
Detected in many
cartilage:
62.6
GFPT2
ENSSSCG00000014012
ENSG00000131459
Glutamine-fructose-6-phosphate transaminase 2
Tissue enhanced
Detected in many
cartilage:
41.9
ovary:
57.7
synovial tissue:
75.8
GFRA1
ENSSSCG00000010655
ENSG00000151892
GDNF family receptor alpha 1
Low tissue specificity
Detected in many
GFRA3
ENSSSCG00000014328
ENSG00000146013
GDNF family receptor alpha 3
Tissue enhanced
Detected in many
adipose tissue:
31.5
brain:
27.3
small intestine:
32.3
vagus nerve:
24.9
GFRA4
ENSSSCG00000021401
ENSG00000125861
GDNF family receptor alpha 4
Tissue enhanced
Detected in many
mesothelial tissue:
31.0
thyroid gland:
47.1
GFY
ENSSSCG00000035723
ENSG00000261949
Golgi associated olfactory signaling regulator
Group enriched
Detected in some
brain:
13.1
retina:
17.2
testis:
15.0
GGA3
ENSSSCG00000017211
ENSG00000125447
Golgi associated, gamma adaptin ear containing, ARF binding protein 3
Low tissue specificity
Detected in all
GGACT
ENSSSCG00000009523
ENSG00000134864
Gamma-glutamylamine cyclotransferase
Tissue enhanced
Detected in all
kidney:
38.1
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