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Human disease related genes
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UMAP gene cluster
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Keyword
Chromosome
1
2
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5
6
7
8
9
10
11
12
13
14
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MT
Unmapped
X
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
Cartilage
Heart
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Lymphoid tissue
Male glands
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Mouth
Skin
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Stomach 1
Upper respiratory system
Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
THE PIG ATLAS
TISSUE SPECIFIC PROTEOME
UMAP GENE CLUSTERING
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4635 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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1.
Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
FGL2
ENSSSCG00000015413
ENSG00000127951
Fibroleukin precursor
Tissue enhanced
Detected in all
synovial tissue:
62.2
FGR
ENSSSCG00000003578
ENSG00000000938
FGR proto-oncogene, Src family tyrosine kinase
Low tissue specificity
Detected in many
FHAD1
ENSSSCG00000003455
ENSG00000142621
Forkhead associated phosphopeptide binding domain 1
Tissue enhanced
Detected in many
epididymis:
33.5
fallopian tube:
29.7
testis:
39.1
upper respiratory system:
24.9
FHL3
ENSSSCG00000003644
ENSG00000183386
Four and a half LIM domains protein 3
Tissue enriched
Detected in many
skeletal muscle:
172.7
FHOD1
ENSSSCG00000026116
ENSG00000135723
Formin homology 2 domain containing 1
Tissue enhanced
Detected in many
skeletal muscle:
57.2
FIBCD1
ENSSSCG00000005707
ENSG00000130720
Fibrinogen C domain containing 1
Group enriched
Detected in some
brain:
41.2
male glands:
21.0
FIBIN
ENSSSCG00000022592
ENSG00000176971
Fin bud initiation factor homolog (zebrafish)
Tissue enhanced
Detected in many
cartilage:
83.3
dura mater:
39.3
FJX1
ENSSSCG00000025588
ENSG00000179431
Four jointed box 1
Low tissue specificity
Detected in many
FKBP9
ENSSSCG00000021250
ENSG00000122642
Peptidyl-prolyl cis-trans isomerase FKBP9 precursor
Low tissue specificity
Detected in all
FLI1
ENSSSCG00000015237
ENSG00000151702
Fli-1 proto-oncogene, ETS transcription factor
Low tissue specificity
Detected in many
FLNB
ENSSSCG00000011471
ENSG00000136068
Filamin B
Low tissue specificity
Detected in all
FLNC
ENSSSCG00000016578
ENSG00000128591
Filamin C
Tissue enhanced
Detected in many
heart:
70.9
skeletal muscle:
158.2
smooth muscle:
105.3
FLRT1
ENSSSCG00000013044
ENSG00000126500
Fibronectin leucine rich transmembrane protein 1
Tissue enhanced
Detected in many
brain:
12.6
kidney:
18.7
lymphoid tissue:
15.7
thyroid gland:
15.4
FLRT2
ENSSSCG00000040166
ENSG00000185070
Fibronectin leucine rich transmembrane protein 2
Tissue enhanced
Detected in all
lens:
42.3
FLVCR2
ENSSSCG00000021606
ENSG00000119686
Feline leukemia virus subgroup C receptor-related protein 2
Tissue enhanced
Detected in many
liver:
25.8
lung:
43.1
FMN1
ENSSSCG00000040466
ENSG00000248905
Formin 1
Tissue enhanced
Detected in many
retina:
47.2
stomach:
65.7
testis:
48.2
FMNL1
ENSSSCG00000017333
ENSG00000184922
Formin like 1
Tissue enhanced
Detected in many
lymphoid tissue:
52.2
FMNL2
ENSSSCG00000015866
ENSG00000157827
Formin like 2
Tissue enhanced
Detected in all
brain:
86.4
FMO1
ENSSSCG00000015268
ENSG00000010932
Dimethylaniline monooxygenase [N-oxide-forming] 1
Tissue enriched
Detected in many
liver:
195.8
FMO2
ENSSSCG00000015267
ENSG00000094963
Flavin containing monooxygenase 2
Tissue enhanced
Detected in many
adipose tissue:
44.7
dura mater:
53.5
lung:
37.0
upper respiratory system:
66.9
FMOD
ENSSSCG00000015270
ENSG00000122176
Fibromodulin
Tissue enriched
Detected in many
cartilage:
254.1
FN1
ENSSSCG00000016174
ENSG00000115414
Fibronectin 1
Tissue enhanced
Detected in many
adipose tissue:
168.3
male glands:
433.9
synovial tissue:
420.5
FNBP1
ENSSSCG00000005689
ENSG00000187239
Formin binding protein 1
Low tissue specificity
Detected in all
FNBP1L
ENSSSCG00000006894
ENSG00000137942
Formin binding protein 1 like
Low tissue specificity
Detected in all
FNDC1
ENSSSCG00000004052
ENSG00000164694
Fibronectin type III domain containing 1
Tissue enhanced
Detected in many
dura mater:
58.1
mesothelial tissue:
57.0
synovial tissue:
45.8
FNDC10
ENSSSCG00000037622
ENSG00000228594
Fibronectin type III domain containing 10
Tissue enhanced
Detected in many
adrenal gland:
6.3
brain:
12.2
FNDC3B
ENSSSCG00000011752
ENSG00000075420
Fibronectin type III domain containing 3B
Low tissue specificity
Detected in all
FNDC4
ENSSSCG00000029305
ENSG00000115226
Fibronectin type III domain containing 4
Tissue enhanced
Detected in many
brain:
35.6
FNDC5
ENSSSCG00000025834
ENSG00000160097
Fibronectin type III domain containing 5
Tissue enhanced
Detected in some
brain:
43.5
choroid plexus:
28.5
retina:
14.5
FNDC9
ENSSSCG00000017055
ENSG00000172568
Fibronectin type III domain containing 9
Tissue enhanced
Detected in many
brain:
17.6
lymphoid tissue:
34.2
FNTA
ENSSSCG00000037221
ENSG00000168522
Farnesyltransferase, CAAX box, alpha
Tissue enhanced
Detected in all
brain:
57.4
FOLH1B
ENSSSCG00000027093
ENSG00000086205
Glutamate carboxypeptidase 2
Tissue enhanced
Detected in many
brain:
60.3
lens:
40.1
FOLR1
ENSSSCG00000022236
ENSG00000110195
Folate receptor alpha precursor
Tissue enhanced
Detected in all
choroid plexus:
123.7
synovial tissue:
158.6
FOLR2
ENSSSCG00000014812
ENSG00000165457
Folate receptor 2 precursor
Tissue enhanced
Detected in many
cartilage:
59.1
liver:
94.8
FOS
ENSSSCG00000002383
ENSG00000170345
Proto-oncogene c-Fos
Tissue enhanced
Detected in many
aorta:
123.9
synovial tissue:
121.3
FOSB
ENSSSCG00000031616
ENSG00000125740
FosB proto-oncogene, AP-1 transcription factor subunit
Tissue enhanced
Detected in many
aorta:
129.4
cartilage:
83.1
synovial tissue:
89.9
FOXA1
ENSSSCG00000037634
ENSG00000129514
Forkhead box A1
Tissue enhanced
Detected in many
breast:
20.5
esophagus:
19.7
male glands:
38.3
upper respiratory system:
22.5
FOXB2
ENSSSCG00000005279
ENSG00000204612
Forkhead box B2
Group enriched
Detected in some
brain:
10.5
penis:
8.0
FOXC1
ENSSSCG00000039756
ENSG00000054598
Forkhead box C1
Tissue enhanced
Detected in many
cartilage:
121.3
salivary gland:
38.6
FOXC2
ENSSSCG00000029296
ENSG00000176692
Forkhead box C2
Tissue enhanced
Detected in many
cartilage:
61.3
penis:
46.1
vagus nerve:
63.1
FOXD1
ENSSSCG00000035878
ENSG00000251493
Forkhead box D1
Tissue enhanced
Detected in many
brain:
14.0
dura mater:
27.7
vagus nerve:
29.4
FOXD2
ENSSSCG00000034880
ENSG00000186564
Forkhead box D2
Tissue enhanced
Detected in many
large intestine:
24.6
vagus nerve:
38.9
FOXD3
ENSSSCG00000032215
ENSG00000187140
Forkhead box D3
Tissue enhanced
Detected in many
brain:
10.9
vagus nerve:
36.0
FOXJ1
ENSSSCG00000017187
ENSG00000129654
Forkhead box J1
Tissue enhanced
Detected in some
fallopian tube:
107.2
upper respiratory system:
81.5
FOXL1
ENSSSCG00000002658
ENSG00000176678
Forkhead box L1
Tissue enhanced
Detected in many
cartilage:
16.4
penis:
16.0
urinary bladder:
23.1
FOXN2
ENSSSCG00000029593
ENSG00000170802
Forkhead box N2
Low tissue specificity
Detected in all
FOXN3
ENSSSCG00000002429
ENSG00000053254
Forkhead box protein N3
Low tissue specificity
Detected in all
FOXO1
ENSSSCG00000009370
ENSG00000150907
Forkhead box O1
Low tissue specificity
Detected in all
FOXO6
ENSSSCG00000035074
ENSG00000204060
Forkhead box O6
Tissue enhanced
Detected in many
stomach:
33.9
FOXP2
ENSSSCG00000016639
ENSG00000128573
Forkhead box protein P2
Tissue enhanced
Detected in many
smooth muscle:
59.6
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