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Gene name
Human disease related genes
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UMAP gene cluster
Pig tissue group category (RNA)
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Keyword
Chromosome
1
2
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6
7
8
9
10
11
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MT
Unmapped
X
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
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Lymphoid tissue
Male glands
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Mouth
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Stomach 1
Upper respiratory system
Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
THE PIG ATLAS
TISSUE SPECIFIC PROTEOME
UMAP GENE CLUSTERING
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322 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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1.
Select data columns:
Gene
Expand
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
2.
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
na
ENSSSCG00000035067
Low tissue specificity
Detected in many
na
ENSSSCG00000035275
Tissue enhanced
Detected in many
adipose tissue:
27.7
bone marrow:
17.8
na
ENSSSCG00000035380
ENSG00000100380
Tissue enhanced
Detected in all
adipose tissue:
19.4
liver:
16.5
na
ENSSSCG00000035460
Tissue enhanced
Detected in many
cartilage:
28.6
mesothelial tissue:
29.1
penis:
37.5
na
ENSSSCG00000035508
Tissue enhanced
Detected in some
adipose tissue:
1.3
testis:
1.2
na
ENSSSCG00000035626
Tissue enhanced
Detected in many
vagus nerve:
13.2
na
ENSSSCG00000035692
Low tissue specificity
Detected in all
na
ENSSSCG00000035832
Tissue enhanced
Detected in many
adipose tissue:
5.8
na
ENSSSCG00000035855
Tissue enhanced
Detected in some
adipose tissue:
8.5
aorta:
5.5
mesothelial tissue:
6.2
na
ENSSSCG00000037311
Tissue enhanced
Detected in some
adipose tissue:
20.9
aorta:
10.3
bone marrow:
11.1
heart:
8.7
skeletal muscle:
9.2
na
ENSSSCG00000037526
Low tissue specificity
Detected in many
na
ENSSSCG00000037830
Tissue enhanced
Detected in some
adipose tissue:
11.1
heart:
6.6
lymphoid tissue:
6.3
mouth:
5.4
na
ENSSSCG00000037899
Tissue enriched
Detected in many
heart:
55.5
na
ENSSSCG00000038322
Tissue enhanced
Detected in many
adipose tissue:
64.0
aorta:
46.9
bone marrow:
38.0
mesothelial tissue:
20.7
na
ENSSSCG00000038974
Tissue enhanced
Detected in many
aorta:
16.3
mesothelial tissue:
18.2
na
ENSSSCG00000039354
Tissue enhanced
Detected in many
adipose tissue:
33.4
bone marrow:
17.0
na
ENSSSCG00000039520
Tissue enhanced
Detected in some
adipose tissue:
3.6
penis:
2.2
na
ENSSSCG00000039521
Tissue enhanced
Detected in some
upper respiratory system:
4.6
vagus nerve:
3.8
na
ENSSSCG00000039832
Tissue enhanced
Detected in some
bone marrow:
5.3
mesothelial tissue:
8.3
synovial tissue:
5.8
na
ENSSSCG00000040117
Tissue enhanced
Detected in some
adipose tissue:
7.6
breast:
4.6
na
ENSSSCG00000040254
Tissue enhanced
Detected in some
adipose tissue:
3.1
na
ENSSSCG00000040701
ENSG00000136732
Tissue enhanced
Detected in all
heart:
32.1
thyroid gland:
31.5
NES
ENSSSCG00000006474
ENSG00000132688
Nestin
Group enriched
Detected in many
heart:
67.3
vagus nerve:
30.4
NEURL1B
ENSSSCG00000016992
ENSG00000214357
Neuralized E3 ubiquitin protein ligase 1B
Low tissue specificity
Detected in many
NOS3
ENSSSCG00000016450
ENSG00000164867
Nitric oxide synthase, endothelial
Tissue enhanced
Detected in many
penis:
48.6
NOTCH3
ENSSSCG00000025176
ENSG00000074181
Notch 3
Low tissue specificity
Detected in all
NOTCH4
ENSSSCG00000001440
ENSG00000204301
Neurogenic locus notch homolog protein 4 precursor
Low tissue specificity
Detected in many
NPR1
ENSSSCG00000006572
ENSG00000169418
Natriuretic peptide receptor 1
Tissue enhanced
Detected in many
adipose tissue:
45.7
aorta:
28.4
mesothelial tissue:
26.9
NRP1
ENSSSCG00000011102
ENSG00000099250
Neuropilin 1
Tissue enhanced
Detected in many
adrenal gland:
79.8
OR2S2
ENSSSCG00000039114
ENSG00000278889
Olfactory receptor family 2 subfamily S member 2 (gene/pseudogene)
Tissue enhanced
Detected in some
heart:
3.4
testis:
5.0
OR6K3
ENSSSCG00000040627
ENSG00000203757
Olfactory receptor family 6 subfamily K member 3
Tissue enhanced
Detected in some
adipose tissue:
2.3
heart:
1.9
lymphoid tissue:
1.8
mesothelial tissue:
1.7
OR6N1
ENSSSCG00000006424
ENSG00000197403
Olfactory receptor family 6 subfamily N member 1
Tissue enhanced
Detected in some
adipose tissue:
6.6
lymphoid tissue:
8.1
mesothelial tissue:
4.6
OR6N2
ENSSSCG00000006423
ENSG00000188340
Olfactory receptor family 6 subfamily N member 2
Tissue enhanced
Detected in many
adipose tissue:
11.9
lymphoid tissue:
8.7
OR6V1
ENSSSCG00000024155
ENSG00000225781
Olfactory receptor family 6 subfamily V member 1
Tissue enhanced
Detected in many
liver:
21.9
ORMDL3
ENSSSCG00000017492
ENSG00000172057
ORMDL sphingolipid biosynthesis regulator 3
Tissue enhanced
Detected in all
adipose tissue:
90.6
liver:
67.4
PALMD
ENSSSCG00000006874
ENSG00000099260
Palmdelphin
Low tissue specificity
Detected in many
PCDH12
ENSSSCG00000014395
ENSG00000113555
Protocadherin 12
Low tissue specificity
Detected in many
PDE3B
ENSSSCG00000013388
ENSG00000152270
Phosphodiesterase 3B
Tissue enhanced
Detected in all
lens:
44.1
PDGFB
ENSSSCG00000033327
ENSG00000100311
Platelet derived growth factor subunit B
Low tissue specificity
Detected in many
PDGFRB
ENSSSCG00000022741
ENSG00000113721
Platelet derived growth factor receptor beta
Low tissue specificity
Detected in many
PEAK1
ENSSSCG00000001869
ENSG00000173517
Pseudopodium-enriched atypical kinase 1
Low tissue specificity
Detected in all
PEAR1
ENSSSCG00000006463
ENSG00000187800
Platelet endothelial aggregation receptor 1
Low tissue specificity
Detected in all
PECAM1
ENSSSCG00000017277
ENSG00000261371
Platelet endothelial cell adhesion molecule precursor
Tissue enhanced
Detected in many
cartilage:
100.2
PGLYRP2
ENSSSCG00000025560
ENSG00000161031
N-acetylmuramoyl-L-alanine amidase precursor
Tissue enhanced
Detected in some
kidney:
7.9
liver:
27.9
PHACTR2
ENSSSCG00000004132
ENSG00000112419
Phosphatase and actin regulator 2
Low tissue specificity
Detected in all
PLIN1
ENSSSCG00000001844
ENSG00000166819
Perilipin-1
Group enriched
Detected in many
adipose tissue:
207.5
aorta:
81.3
bone marrow:
108.1
PLIN4
ENSSSCG00000013512
ENSG00000167676
Perilipin 4
Tissue enhanced
Detected in many
adipose tissue:
121.5
aorta:
63.1
bone marrow:
45.7
PLXND1
ENSSSCG00000011592
ENSG00000004399
Plexin D1
Low tissue specificity
Detected in many
PNPLA2
ENSSSCG00000012841
ENSG00000177666
Patatin-like phospholipase domain-containing protein 2
Tissue enhanced
Detected in all
adipose tissue:
136.1
PON3
ENSSSCG00000029515
ENSG00000105852
Serum paraoxonase/lactonase 3 precursor
Group enriched
Detected in some
adipose tissue:
20.3
liver:
58.8
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