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UMAP gene cluster
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Keyword
Chromosome
1
2
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6
7
8
9
10
11
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MT
Unmapped
X
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
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Lymphoid tissue
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Stomach 1
Upper respiratory system
Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
THE PIG ATLAS
TISSUE SPECIFIC PROTEOME
UMAP GENE CLUSTERING
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234 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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1.
Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
2.
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
na
ENSSSCG00000037949
Tissue enhanced
Detected in many
lymphoid tissue:
39.5
upper respiratory system:
19.9
na
ENSSSCG00000038354
Tissue enhanced
Detected in many
lymphoid tissue:
19.8
na
ENSSSCG00000039407
Tissue enhanced
Detected in many
lymphoid tissue:
25.1
na
ENSSSCG00000039899
ENSG00000284873
Tissue enhanced
Detected in many
mouth:
4.6
na
ENSSSCG00000039961
Tissue enhanced
Detected in many
brain:
14.5
lymphoid tissue:
13.8
na
ENSSSCG00000040016
Tissue enhanced
Detected in many
lymphoid tissue:
25.1
na
ENSSSCG00000040811
ENSG00000103490
Low tissue specificity
Detected in all
NAAA
ENSSSCG00000008973
ENSG00000138744
N-acylethanolamine acid amidase
Tissue enhanced
Detected in all
kidney:
54.4
NAPSA
ENSSSCG00000003212
ENSG00000131400
Napsin A aspartic peptidase
Tissue enhanced
Detected in many
lung:
42.0
lymphoid tissue:
15.9
NCF2
ENSSSCG00000015559
ENSG00000116701
Neutrophil cytosol factor 2
Tissue enhanced
Detected in many
lymphoid tissue:
46.1
synovial tissue:
22.1
NCF4
ENSSSCG00000000137
ENSG00000100365
Neutrophil cytosolic factor 4
Tissue enhanced
Detected in many
lymphoid tissue:
37.3
stomach:
29.6
NCKAP1L
ENSSSCG00000000295
ENSG00000123338
NCK associated protein 1 like
Tissue enhanced
Detected in many
lymphoid tissue:
44.7
NCR1
ENSSSCG00000022675
ENSG00000189430
Natural cytotoxicity triggering receptor 1 precursor
Tissue enhanced
Detected in many
lymphoid tissue:
17.1
NFAM1
ENSSSCG00000037425
ENSG00000235568
NFAT activating protein with ITAM motif 1
Tissue enhanced
Detected in many
lung:
16.0
synovial tissue:
13.2
NFKBIE
ENSSSCG00000001703
ENSG00000146232
NFKB inhibitor epsilon
Low tissue specificity
Detected in all
NKG7
ENSSSCG00000003231
ENSG00000105374
Protein NKG7
Tissue enhanced
Detected in many
bone marrow:
28.4
lung:
28.3
P2RY8
ENSSSCG00000035911
ENSG00000182162
P2Y receptor family member 8
Tissue enhanced
Detected in many
lymphoid tissue:
43.0
upper respiratory system:
30.2
PARP14
ENSSSCG00000011874
ENSG00000173193
Poly(ADP-ribose) polymerase family member 14
Tissue enhanced
Detected in many
lymphoid tissue:
27.1
small intestine:
35.3
PARVG
ENSSSCG00000000025
ENSG00000138964
Gamma-parvin
Tissue enhanced
Detected in many
lymphoid tissue:
38.8
stomach:
21.2
PCED1B
ENSSSCG00000000811
ENSG00000179715
PC-esterase domain containing 1B
Tissue enhanced
Detected in many
endometrium:
46.4
lymphoid tissue:
51.7
PIK3AP1
ENSSSCG00000010509
ENSG00000155629
Phosphoinositide 3-kinase adapter protein 1
Tissue enhanced
Detected in all
lymphoid tissue:
49.3
PIK3C2B
ENSSSCG00000015283
ENSG00000133056
Phosphatidylinositol-4-phosphate 3-kinase catalytic subunit type 2 beta
Low tissue specificity
Detected in all
PIK3R5
ENSSSCG00000017991
ENSG00000141506
Phosphoinositide 3-kinase regulatory subunit 5
Tissue enhanced
Detected in many
lymphoid tissue:
43.2
stomach:
27.3
PLAC8
ENSSSCG00000009240
ENSG00000145287
Placenta specific 8
Group enriched
Detected in many
adipose tissue:
33.1
lymphoid tissue:
51.6
mesothelial tissue:
49.4
PLCB2
ENSSSCG00000004779
ENSG00000137841
Phospholipase C beta 2
Tissue enhanced
Detected in many
lymphoid tissue:
58.0
PLCG2
ENSSSCG00000002688
ENSG00000197943
Phospholipase C gamma 2
Tissue enhanced
Detected in many
cartilage:
44.5
lymphoid tissue:
44.7
PMAIP1
ENSSSCG00000026454
Phorbol-12-myristate-13-acetate-induced protein 1
Low tissue specificity
Detected in many
POU2F2
ENSSSCG00000037132
ENSG00000028277
POU domain, class 2, transcription factor 2
Tissue enhanced
Detected in many
lymphoid tissue:
56.2
stomach:
25.0
upper respiratory system:
25.1
PSMB10
ENSSSCG00000031781
ENSG00000205220
Proteasome subunit beta type-10
Tissue enhanced
Detected in all
large intestine:
59.2
PTAFR
ENSSSCG00000031788
ENSG00000169403
Platelet activating factor receptor
Tissue enhanced
Detected in many
synovial tissue:
31.3
PTGER2
ENSSSCG00000021862
ENSG00000125384
Prostaglandin E receptor 2
Low tissue specificity
Detected in all
PTPN6
ENSSSCG00000025537
ENSG00000111679
Protein tyrosine phosphatase, non-receptor type 6
Tissue enhanced
Detected in all
lymphoid tissue:
57.4
PTPRC
ENSSSCG00000010908
ENSG00000081237
Protein tyrosine phosphatase, receptor type C
Tissue enhanced
Detected in many
lung:
34.8
lymphoid tissue:
98.6
upper respiratory system:
33.5
PTPRCAP
ENSSSCG00000012909
ENSG00000213402
Protein tyrosine phosphatase, receptor type C associated protein
Tissue enhanced
Detected in many
lung:
35.4
lymphoid tissue:
108.0
small intestine:
39.3
upper respiratory system:
46.9
PTPRE
ENSSSCG00000010755
ENSG00000132334
Protein tyrosine phosphatase, receptor type E
Low tissue specificity
Detected in many
RAB8B
ENSSSCG00000026571
ENSG00000166128
RAB8B, member RAS oncogene family
Low tissue specificity
Detected in all
RAC2
ENSSSCG00000021944
ENSG00000128340
Rac family small GTPase 2
Tissue enhanced
Detected in many
lymphoid tissue:
60.0
stomach:
53.4
RASAL3
ENSSSCG00000013839
ENSG00000105122
RAS protein activator like 3
Tissue enhanced
Detected in many
lymphoid tissue:
28.7
stomach:
16.5
RASGRP2
ENSSSCG00000013023
ENSG00000068831
RAS guanyl-releasing protein 2
Tissue enhanced
Detected in many
lymphoid tissue:
48.8
RASGRP3
ENSSSCG00000008509
ENSG00000152689
RAS guanyl releasing protein 3
Tissue enhanced
Detected in all
lymphoid tissue:
48.3
RCSD1
ENSSSCG00000006307
ENSG00000198771
CapZ-interacting protein
Tissue enhanced
Detected in many
lymphoid tissue:
43.6
RUBCNL
ENSSSCG00000009410
ENSG00000102445
RUN and cysteine rich domain containing beclin 1 interacting protein like
Low tissue specificity
Detected in all
SAMD1
ENSSSCG00000033298
ENSG00000141858
Sterile alpha motif domain containing 1
Low tissue specificity
Detected in all
SAMD3
ENSSSCG00000004202
ENSG00000164483
Sterile alpha motif domain containing 3
Tissue enhanced
Detected in many
lymphoid tissue:
13.6
SERPINB9
ENSSSCG00000031615
ENSG00000170542
Serpin B9
Tissue enhanced
Detected in many
lymphoid tissue:
43.9
SIPA1
ENSSSCG00000012982
ENSG00000213445
Signal-induced proliferation-associated 1
Tissue enhanced
Detected in many
lymphoid tissue:
53.6
SKAP2
ENSSSCG00000016708
ENSG00000005020
Src kinase associated phosphoprotein 2
Low tissue specificity
Detected in many
SLC11A1
ENSSSCG00000039798
ENSG00000018280
Natural resistance-associated macrophage protein 1
Tissue enriched
Detected in some
lymphoid tissue:
65.1
SLC20A1
ENSSSCG00000032288
ENSG00000144136
Solute carrier family 20 member 1
Tissue enhanced
Detected in all
cartilage:
78.6
SLC6A3
ENSSSCG00000017121
ENSG00000142319
Solute carrier family 6 member 3
Tissue enriched
Detected in some
brain:
106.4
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