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Human disease related genes
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UMAP gene cluster
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Chromosome
1
2
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7
8
9
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MT
Unmapped
X
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
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Stomach 1
Upper respiratory system
Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
THE PIG ATLAS
TISSUE SPECIFIC PROTEOME
UMAP GENE CLUSTERING
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234 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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1.
Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
SNX20
ENSSSCG00000025741
ENSG00000167208
Sorting nexin 20
Tissue enhanced
Detected in many
lymphoid tissue:
14.6
SRGN
ENSSSCG00000023374
ENSG00000122862
Serglycin
Tissue enhanced
Detected in many
bone marrow:
75.2
dura mater:
42.3
SSC4D
ENSSSCG00000036391
ENSG00000146700
Scavenger receptor cysteine rich family member with 4 domains
Tissue enhanced
Detected in many
lymphoid tissue:
11.4
stomach:
7.6
SSH2
ENSSSCG00000017791
ENSG00000141298
Slingshot protein phosphatase 2
Tissue enhanced
Detected in all
skeletal muscle:
56.6
ST6GAL1
ENSSSCG00000025770
ENSG00000073849
ST6 beta-galactoside alpha-2,6-sialyltransferase 1
Tissue enhanced
Detected in many
liver:
102.6
ST8SIA4
ENSSSCG00000035539
ENSG00000113532
CMP-N-acetylneuraminate-poly-alpha-2,8-sialyltransferase precursor
Tissue enhanced
Detected in many
lymphoid tissue:
30.4
STAP1
ENSSSCG00000008923
ENSG00000035720
Signal transducing adaptor family member 1
Tissue enhanced
Detected in many
lymphoid tissue:
27.0
STAT1
ENSSSCG00000016057
ENSG00000115415
Signal transducer and activator of transcription 1
Low tissue specificity
Detected in all
STAT2
ENSSSCG00000000396
ENSG00000170581
Signal transducer and activator of transcription 2
Tissue enhanced
Detected in all
liver:
75.2
STAT4
ENSSSCG00000016059
ENSG00000138378
Signal transducer and activator of transcription 4
Tissue enriched
Detected in some
testis:
72.7
SYK
ENSSSCG00000009589
ENSG00000165025
Tyrosine-protein kinase SYK
Tissue enhanced
Detected in many
lymphoid tissue:
45.1
upper respiratory system:
24.1
TAGAP
ENSSSCG00000004053
ENSG00000164691
T-cell activation Rho GTPase-activating protein
Low tissue specificity
Detected in all
TBC1D5
ENSSSCG00000011199
ENSG00000131374
TBC1 domain family member 5
Low tissue specificity
Detected in all
TBXA2R
ENSSSCG00000033759
ENSG00000006638
Thromboxane A2 receptor
Tissue enriched
Detected in many
lymphoid tissue:
48.8
TBXAS1
ENSSSCG00000016504
ENSG00000059377
Thromboxane-A synthase
Low tissue specificity
Detected in many
TFEC
ENSSSCG00000038138
ENSG00000105967
Transcription factor EC
Tissue enhanced
Detected in many
kidney:
29.7
lymphoid tissue:
40.3
TLR2
ENSSSCG00000009002
ENSG00000137462
Toll-like receptor 2 precursor
Low tissue specificity
Detected in all
TMEM150B
ENSSSCG00000031110
ENSG00000180061
Transmembrane protein 150B
Tissue enhanced
Detected in many
liver:
34.1
TNFSF8
ENSSSCG00000036457
ENSG00000106952
Tumor necrosis factor ligand superfamily member 8
Tissue enhanced
Detected in many
lymphoid tissue:
14.9
TRAF3
ENSSSCG00000002525
ENSG00000131323
TNF receptor associated factor 3
Low tissue specificity
Detected in all
TRAF3IP3
ENSSSCG00000032721
ENSG00000009790
TRAF3 interacting protein 3
Tissue enhanced
Detected in all
lymphoid tissue:
58.4
TRIM14
ENSSSCG00000033222
ENSG00000106785
Tripartite motif containing 14
Low tissue specificity
Detected in all
TRIM38
ENSSSCG00000035153
ENSG00000112343
Tripartite motif containing 38
Tissue enhanced
Detected in all
lymphoid tissue:
26.1
TRPV2
ENSSSCG00000018032
ENSG00000187688
Transient receptor potential cation channel subfamily V member 2
Tissue enhanced
Detected in many
lymphoid tissue:
31.0
stomach:
32.3
TTF2
ENSSSCG00000006733
ENSG00000116830
Transcription termination factor 2
Tissue enhanced
Detected in many
stomach:
31.9
UCP2
ENSSSCG00000014833
ENSG00000175567
Mitochondrial uncoupling protein 2
Tissue enhanced
Detected in many
lens:
49.1
lung:
55.0
lymphoid tissue:
69.1
upper respiratory system:
61.4
USF1
ENSSSCG00000006371
ENSG00000158773
Upstream stimulatory factor 1
Low tissue specificity
Detected in all
VAV1
ENSSSCG00000013553
ENSG00000141968
Proto-oncogene vav
Tissue enhanced
Detected in many
lymphoid tissue:
56.6
WAS
ENSSSCG00000036747
ENSG00000015285
Wiskott-Aldrich syndrome
Tissue enhanced
Detected in all
lymphoid tissue:
69.6
stomach:
41.4
XYLT1
ENSSSCG00000007872
ENSG00000103489
Xylosyltransferase 1
Tissue enriched
Detected in many
cartilage:
92.2
YEATS2
ENSSSCG00000011776
ENSG00000163872
YEATS domain containing 2
Low tissue specificity
Detected in all
ZBED2
ENSSSCG00000011936
ENSG00000177494
Zinc finger BED-type containing 2
Tissue enhanced
Detected in many
esophagus:
35.2
upper respiratory system:
13.9
ZBTB24
ENSSSCG00000004411
ENSG00000112365
Zinc finger and BTB domain containing 24
Low tissue specificity
Detected in all
ZNF648
ENSSSCG00000015544
ENSG00000179930
Zinc finger protein 648
Tissue enhanced
Detected in many
lung:
9.0
lymphoid tissue:
17.3
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