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Gene name
Human disease related genes
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External id
Within tissue variation
UMAP gene cluster
Pig tissue group category (RNA)
Pig brain category (RNA)
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Gene name
Class
Cancers
Cardiovascular diseases
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Digestive system diseases
Endocrine and metabolic diseases
Immune system diseases
Musculoskeletal diseases
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Other congenital disorders
Other diseases
Reproductive system diseases
Respiratory diseases
Skin diseases
Urinary system diseases
Subclass
Class
Biological process
Molecular function
Disease
Keyword
Chromosome
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
MT
Unmapped
X
Y
External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
Cartilage
Heart
Kidney
Large intestine
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Skin
Small intestine
Stomach 1
Upper respiratory system
Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
THE PIG ATLAS
TISSUE SPECIFIC PROTEOME
UMAP GENE CLUSTERING
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234 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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1.
Select data columns:
Gene
Expand
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
2.
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
LPXN
ENSSSCG00000021176
ENSG00000110031
Leupaxin
Tissue enhanced
Detected in many
lymphoid tissue:
46.3
upper respiratory system:
28.9
LRRC8D
ENSSSCG00000038417
ENSG00000171492
Leucine rich repeat containing 8 VRAC subunit D
Low tissue specificity
Detected in all
LSP1
ENSSSCG00000031487
ENSG00000130592
Lymphocyte-specific protein 1
Tissue enhanced
Detected in many
lymphoid tissue:
85.3
LTB4R2
ENSSSCG00000020941
ENSG00000213906
Leukotriene B4 receptor 2
Tissue enhanced
Detected in many
lymphoid tissue:
24.9
LY86
ENSSSCG00000032355
ENSG00000112799
Lymphocyte antigen 86 precursor
Tissue enhanced
Detected in many
lymphoid tissue:
46.7
LYL1
ENSSSCG00000024549
ENSG00000104903
LYL1, basic helix-loop-helix family member
Tissue enhanced
Detected in many
lymphoid tissue:
59.9
LYN
ENSSSCG00000006250
ENSG00000254087
LYN proto-oncogene, Src family tyrosine kinase
Tissue enhanced
Detected in many
lymphoid tissue:
47.7
LYST
ENSSSCG00000010151
ENSG00000143669
Lysosomal trafficking regulator
Low tissue specificity
Detected in all
MAP4K1
ENSSSCG00000002962
ENSG00000104814
Mitogen-activated protein kinase kinase kinase kinase 1
Tissue enhanced
Detected in many
lymphoid tissue:
44.9
stomach:
23.4
upper respiratory system:
25.3
MSC
ENSSSCG00000006187
ENSG00000178860
Musculin
Tissue enhanced
Detected in many
lymphoid tissue:
35.8
MTM1
ENSSSCG00000012742
ENSG00000171100
Myotubularin 1
Low tissue specificity
Detected in all
MYO1F
ENSSSCG00000013604
ENSG00000142347
Myosin IF
Low tissue specificity
Detected in all
MYO1G
ENSSSCG00000016742
ENSG00000136286
Myosin IG
Tissue enhanced
Detected in many
lung:
16.4
lymphoid tissue:
39.0
stomach:
20.4
na
ENSSSCG00000000639
Tissue enhanced
Detected in some
liver:
4.9
lung:
4.5
lymphoid tissue:
7.7
na
ENSSSCG00000000657
Tissue enhanced
Detected in many
large intestine:
62.2
lymphoid tissue:
54.2
na
ENSSSCG00000003236
ENSG00000105492
Tissue enriched
Detected in many
lymphoid tissue:
49.8
na
ENSSSCG00000003278
Leukocyte immunoglobulin-like receptor subfamily B member 3-like isoform 1 precursor
Tissue enhanced
Detected in all
lymphoid tissue:
25.0
na
ENSSSCG00000007944
ENSG00000103426,ENSG00000262246
Low tissue specificity
Detected in all
na
ENSSSCG00000008769
Tissue enhanced
Detected in many
lung:
56.8
synovial tissue:
29.4
na
ENSSSCG00000008812
Low tissue specificity
Detected in all
na
ENSSSCG00000014618
Tissue enhanced
Detected in many
lymphoid tissue:
23.0
stomach:
23.1
na
ENSSSCG00000016451
ENSG00000213203
Tissue enhanced
Detected in many
lymphoid tissue:
23.9
na
ENSSSCG00000018050
ENSG00000154016
Tissue enhanced
Detected in many
lymphoid tissue:
48.9
stomach:
19.6
na
ENSSSCG00000022228
Tissue enhanced
Detected in some
adipose tissue:
9.0
liver:
7.6
lung:
19.1
synovial tissue:
10.7
na
ENSSSCG00000022361
ENSG00000153064
Tissue enhanced
Detected in many
lymphoid tissue:
47.9
na
ENSSSCG00000022773
Caspase-15
Low tissue specificity
Detected in all
na
ENSSSCG00000025271
Tissue enhanced
Detected in many
lymphoid tissue:
28.2
na
ENSSSCG00000026653
Tissue enriched
Detected in many
lymphoid tissue:
32.7
na
ENSSSCG00000027196
ENSG00000133561
Tissue enhanced
Detected in all
lymphoid tissue:
63.0
stomach:
48.0
na
ENSSSCG00000027826
ENSG00000133574
Tissue enhanced
Detected in all
lymphoid tissue:
61.6
na
ENSSSCG00000028531
ENSG00000100092,ENSG00000285304
Tissue enhanced
Detected in many
lymphoid tissue:
59.1
na
ENSSSCG00000029414
Ficolin-1 precursor
Tissue enhanced
Detected in all
adipose tissue:
25.2
bone marrow:
19.2
na
ENSSSCG00000031610
Tissue enhanced
Detected in many
lymphoid tissue:
14.5
stomach:
13.5
na
ENSSSCG00000032135
Low tissue specificity
Detected in many
na
ENSSSCG00000032746
Low tissue specificity
Detected in many
na
ENSSSCG00000033089
Tissue enhanced
Detected in many
large intestine:
26.8
lymphoid tissue:
26.6
small intestine:
26.3
na
ENSSSCG00000033238
ENSG00000091592
Tissue enhanced
Detected in many
lymphoid tissue:
20.6
synovial tissue:
22.3
na
ENSSSCG00000033786
ENSG00000133818
Tissue enhanced
Detected in all
male glands:
42.2
na
ENSSSCG00000033909
ENSG00000213203
Tissue enhanced
Detected in many
lymphoid tissue:
74.7
stomach:
46.3
na
ENSSSCG00000034284
Low tissue specificity
Detected in many
na
ENSSSCG00000034469
Group enriched
Detected in some
adipose tissue:
7.1
aorta:
5.0
lymphoid tissue:
18.5
synovial tissue:
5.2
na
ENSSSCG00000034648
Tissue enhanced
Detected in many
lymphoid tissue:
53.7
stomach:
34.5
na
ENSSSCG00000035162
Low tissue specificity
Detected in all
na
ENSSSCG00000036214
Low tissue specificity
Detected in many
na
ENSSSCG00000036246
Tissue enhanced
Detected in many
lymphoid tissue:
22.4
na
ENSSSCG00000036263
Low tissue specificity
Detected in many
na
ENSSSCG00000036851
Tissue enhanced
Detected in many
gallbladder:
10.9
liver:
10.2
na
ENSSSCG00000037266
Tissue enhanced
Detected in many
lymphoid tissue:
58.9
na
ENSSSCG00000037351
Low tissue specificity
Detected in many
na
ENSSSCG00000037364
ENSG00000173762
Tissue enhanced
Detected in many
lymphoid tissue:
31.6
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