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Human disease related genes
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UMAP gene cluster
Pig tissue group category (RNA)
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Keyword
Chromosome
1
2
3
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5
6
7
8
9
10
11
12
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MT
Unmapped
X
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
Cartilage
Heart
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Lymphoid tissue
Male glands
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Mouth
Skin
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Stomach 1
Upper respiratory system
Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
THE PIG ATLAS
TISSUE SPECIFIC PROTEOME
UMAP GENE CLUSTERING
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234 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
DOK3
ENSSSCG00000031653
ENSG00000146094
Docking protein 3
Tissue enhanced
Detected in many
lymphoid tissue:
30.5
DUSP10
ENSSSCG00000010831
ENSG00000143507
Dual specificity phosphatase 10
Low tissue specificity
Detected in many
EBI3
ENSSSCG00000013498
ENSG00000105246
Interleukin-27 subunit beta precursor
Tissue enhanced
Detected in many
lymphoid tissue:
16.4
EVI2B
ENSSSCG00000017750
ENSG00000185862
Ecotropic viral integration site 2B
Tissue enhanced
Detected in all
lymphoid tissue:
44.5
FAM111B
ENSSSCG00000013147
ENSG00000189057
Family with sequence similarity 111 member B
Low tissue specificity
Detected in many
FAM155B
ENSSSCG00000012386
ENSG00000130054
Family with sequence similarity 155 member B
Tissue enhanced
Detected in all
heart:
38.3
FAM78A
ENSSSCG00000028172
ENSG00000126882
Family with sequence similarity 78 member A
Tissue enhanced
Detected in many
lymphoid tissue:
47.0
skeletal muscle:
22.1
testis:
37.9
FCHSD2
ENSSSCG00000014820
ENSG00000137478
FCH and double SH3 domains 2
Low tissue specificity
Detected in all
FERMT3
ENSSSCG00000013041
ENSG00000149781
Fermitin family member 3
Tissue enhanced
Detected in all
lymphoid tissue:
54.0
FGD2
ENSSSCG00000001572
ENSG00000146192
FYVE, RhoGEF and PH domain containing 2
Tissue enhanced
Detected in many
lymphoid tissue:
64.4
FMNL1
ENSSSCG00000017333
ENSG00000184922
Formin like 1
Tissue enhanced
Detected in many
lymphoid tissue:
52.2
GIMAP2
ENSSSCG00000016449
ENSG00000106560
GTPase, IMAP family member 2
Tissue enhanced
Detected in many
large intestine:
5.1
lymphoid tissue:
6.8
small intestine:
5.7
stomach:
7.5
GIMAP7
ENSSSCG00000031897
ENSG00000179144
GTPase, IMAP family member 7
Tissue enhanced
Detected in many
large intestine:
13.1
lymphoid tissue:
26.4
GIMAP8
ENSSSCG00000016452
ENSG00000171115
GTPase, IMAP family member 8
Tissue enhanced
Detected in many
lymphoid tissue:
34.0
GM2A
ENSSSCG00000017087
ENSG00000196743
GM2 ganglioside activator
Tissue enhanced
Detected in all
ovary:
56.9
GMFG
ENSSSCG00000040981
ENSG00000130755
Glia maturation factor gamma
Tissue enhanced
Detected in many
lymphoid tissue:
75.4
GMIP
ENSSSCG00000013931
ENSG00000089639
GEM interacting protein
Tissue enhanced
Detected in many
lymphoid tissue:
28.2
stomach:
33.9
GNA15
ENSSSCG00000013473
ENSG00000060558
G protein subunit alpha 15
Tissue enhanced
Detected in many
lymphoid tissue:
24.2
GP91-PHOX
ENSSSCG00000012229
ENSG00000165168
Cytochrome b-245 heavy chain precursor
Tissue enhanced
Detected in many
lung:
31.0
lymphoid tissue:
49.0
synovial tissue:
37.3
GPBAR1
ENSSSCG00000022483
ENSG00000179921
G protein-coupled bile acid receptor 1
Tissue enriched
Detected in some
gallbladder:
33.1
GPR183
ENSSSCG00000009517
ENSG00000169508
G protein-coupled receptor 183
Tissue enhanced
Detected in all
lymphoid tissue:
43.2
GPR35
ENSSSCG00000040095
ENSG00000178623
G protein-coupled receptor 35
Tissue enhanced
Detected in many
lymphoid tissue:
13.5
stomach:
19.9
GPR65
ENSSSCG00000021146
ENSG00000140030
G protein-coupled receptor 65
Tissue enhanced
Detected in many
lymphoid tissue:
18.7
GPSM3
ENSSSCG00000001439
ENSG00000213654
G-protein-signaling modulator 3
Tissue enhanced
Detected in many
lymphoid tissue:
77.1
HCK
ENSSSCG00000007240
ENSG00000101336
HCK proto-oncogene, Src family tyrosine kinase
Tissue enhanced
Detected in all
lymphoid tissue:
58.8
HCLS1
ENSSSCG00000011884
ENSG00000180353
Hematopoietic cell-specific Lyn substrate 1
Tissue enhanced
Detected in many
lymphoid tissue:
59.9
HCST
ENSSSCG00000002918
ENSG00000126264
Hematopoietic cell signal transducer
Tissue enhanced
Detected in all
lymphoid tissue:
31.9
HIP1R
ENSSSCG00000009786
ENSG00000130787
Huntingtin interacting protein 1 related
Low tissue specificity
Detected in many
HMOX1
ENSSSCG00000039745
ENSG00000100292
Heme oxygenase 1
Tissue enriched
Detected in many
lymphoid tissue:
118.9
HTRA4
ENSSSCG00000015810
ENSG00000169495
HtrA serine peptidase 4
Group enriched
Detected in many
cartilage:
44.7
lymphoid tissue:
22.2
synovial tissue:
57.7
ICAM3
ENSSSCG00000013649
ENSG00000076662
Intercellular adhesion molecule 3 precursor
Tissue enhanced
Detected in many
dura mater:
9.3
lung:
8.6
lymphoid tissue:
21.6
IKZF1
ENSSSCG00000038345
ENSG00000185811
IKAROS family zinc finger 1
Tissue enhanced
Detected in many
lymphoid tissue:
58.1
stomach:
28.1
IL10
ENSSSCG00000015652
ENSG00000136634
Interleukin-10
Tissue enhanced
Detected in many
lymphoid tissue:
16.1
IL10RA
ENSSSCG00000015085
ENSG00000110324
Interleukin 10 receptor subunit alpha
Tissue enhanced
Detected in many
lymphoid tissue:
47.1
IL18
ENSSSCG00000015037
ENSG00000150782
Interleukin-18
Low tissue specificity
Detected in many
IL27
ENSSSCG00000039300
ENSG00000197272
Interleukin-27 subunit alpha precursor
Tissue enhanced
Detected in some
lung:
3.5
lymphoid tissue:
7.5
IL2RA
ENSSSCG00000022849
ENSG00000134460
Interleukin-2 receptor subunit alpha precursor
Tissue enhanced
Detected in many
lymphoid tissue:
23.3
IL2RB
ENSSSCG00000029668
ENSG00000100385
Interleukin 2 receptor subunit beta
Tissue enhanced
Detected in many
lymphoid tissue:
37.9
stomach:
44.7
INPP5D
ENSSSCG00000016298
ENSG00000168918
Inositol polyphosphate-5-phosphatase D
Tissue enhanced
Detected in many
lymphoid tissue:
54.2
IRAK4
ENSSSCG00000000799
ENSG00000198001
Interleukin-1 receptor-associated kinase 4
Low tissue specificity
Detected in all
IRF5
ENSSSCG00000016573
ENSG00000128604
Interferon regulatory factor 5
Tissue enhanced
Detected in many
lymphoid tissue:
37.5
IRF8
ENSSSCG00000034980
ENSG00000140968
Interferon regulatory factor 8
Tissue enhanced
Detected in many
lymphoid tissue:
48.4
stomach:
28.9
ITGAL
ENSSSCG00000007797
ENSG00000005844
Integrin alpha-L precursor
Tissue enhanced
Detected in many
lymphoid tissue:
49.4
stomach:
27.1
ITGAX
ENSSSCG00000007754
ENSG00000140678
Integrin subunit alpha X
Tissue enhanced
Detected in all
lymphoid tissue:
83.4
ITGB2
ENSSSCG00000025133
ENSG00000160255
Integrin beta-2 precursor
Tissue enhanced
Detected in all
lymphoid tissue:
71.8
KYNU
ENSSSCG00000015673
ENSG00000115919
Kynureninase
Tissue enhanced
Detected in many
breast:
25.1
liver:
44.6
LAT2
ENSSSCG00000027487
ENSG00000086730
Linker for activation of T-cells family member 2 precursor
Tissue enhanced
Detected in many
lymphoid tissue:
41.5
LCP1
ENSSSCG00000009412
ENSG00000136167
Lymphocyte cytosolic protein 1
Tissue enhanced
Detected in many
lymphoid tissue:
107.8
upper respiratory system:
55.1
LCP2
ENSSSCG00000017006
ENSG00000043462
Lymphocyte cytosolic protein 2
Tissue enhanced
Detected in many
lymphoid tissue:
115.5
stomach:
43.9
LPCAT1
ENSSSCG00000017116
ENSG00000153395
Lysophosphatidylcholine acyltransferase 1
Tissue enhanced
Detected in all
lung:
33.7
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