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Keyword
Chromosome
1
2
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5
6
7
8
9
10
11
12
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MT
Unmapped
X
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
Cartilage
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Lymphoid tissue
Male glands
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Mouth
Skin
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Stomach 1
Upper respiratory system
Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
THE PIG ATLAS
TISSUE SPECIFIC PROTEOME
UMAP GENE CLUSTERING
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595 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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1.
Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
NGF
ENSSSCG00000032417
ENSG00000134259
Nerve growth factor
Low tissue specificity
Detected in all
NGFR
ENSSSCG00000017548
ENSG00000064300
Nerve growth factor receptor
Tissue enhanced
Detected in many
vagus nerve:
28.9
NID1
ENSSSCG00000026819
ENSG00000116962
Nidogen 1
Tissue enhanced
Detected in many
lens:
103.6
NKX3-2
ENSSSCG00000034181
ENSG00000109705
NK3 homeobox 2
Tissue enhanced
Detected in many
cartilage:
34.0
smooth muscle:
20.8
NOSTRIN
ENSSSCG00000015923
ENSG00000163072
Nitric oxide synthase trafficking
Low tissue specificity
Detected in many
NOTCH2
ENSSSCG00000006709
ENSG00000134250
Notch 2
Low tissue specificity
Detected in all
NOX5
ENSSSCG00000004966
ENSG00000255346
NADPH oxidase 5
Tissue enhanced
Detected in many
mesothelial tissue:
18.5
urinary bladder:
24.4
NR2F2
ENSSSCG00000002254
ENSG00000185551
COUP transcription factor 2 isoform 2
Low tissue specificity
Detected in all
NR4A1
ENSSSCG00000031321
ENSG00000123358
Nuclear receptor subfamily 4 group A member 1
Tissue enhanced
Detected in many
cartilage:
138.9
NR4A2
ENSSSCG00000015871
ENSG00000153234
Nuclear receptor subfamily 4 group A member 2
Tissue enhanced
Detected in many
cartilage:
110.4
male glands:
119.9
vagus nerve:
70.0
NR4A3
ENSSSCG00000005385
ENSG00000119508
Nuclear receptor subfamily 4 group A member 3
Tissue enhanced
Detected in many
heart:
83.4
male glands:
171.7
NRBP1
ENSSSCG00000022454
ENSG00000115216
Nuclear receptor-binding protein
Low tissue specificity
Detected in all
OLFML2A
ENSSSCG00000005593
ENSG00000185585
Olfactomedin-like protein 2A precursor
Tissue enhanced
Detected in all
salivary gland:
62.3
OLFML2B
ENSSSCG00000006345
ENSG00000162745
Olfactomedin like 2B
Tissue enhanced
Detected in many
smooth muscle:
70.2
OR52W1
ENSSSCG00000035041
ENSG00000175485
Olfactory receptor family 52 subfamily W member 1
Tissue enhanced
Detected in many
cartilage:
11.0
mesothelial tissue:
12.4
ORAI1
ENSSSCG00000034510
ENSG00000276045
Calcium release-activated calcium channel protein 1
Low tissue specificity
Detected in all
OSBPL5
ENSSSCG00000012862
ENSG00000021762
Oxysterol binding protein like 5
Low tissue specificity
Detected in all
OSM
ENSSSCG00000009997
ENSG00000099985
Oncostatin M
Tissue enhanced
Detected in many
bone marrow:
10.2
OSMR
ENSSSCG00000016851
ENSG00000145623
Oncostatin M receptor
Low tissue specificity
Detected in all
OSR1
ENSSSCG00000008606
ENSG00000143867
Odd-skipped related transciption factor 1
Tissue enhanced
Detected in many
urinary bladder:
50.0
OSR2
ENSSSCG00000006073
ENSG00000164920
Odd-skipped related transciption factor 2
Tissue enhanced
Detected in many
cervix:
47.6
ductus deferens:
50.6
OTUD1
ENSSSCG00000011076
ENSG00000165312
OTU deubiquitinase 1
Tissue enhanced
Detected in many
aorta:
43.2
heart:
50.2
skeletal muscle:
98.6
OXCT1
ENSSSCG00000016863
ENSG00000083720
Succinyl-CoA:3-ketoacid coenzyme A transferase 1, mitochondrial
Low tissue specificity
Detected in all
P2RX1
ENSSSCG00000022405
ENSG00000108405
Purinergic receptor P2X 1
Tissue enhanced
Detected in many
penis:
89.2
urinary bladder:
37.3
P4HA2
ENSSSCG00000020915
ENSG00000072682
Prolyl 4-hydroxylase subunit alpha 2
Low tissue specificity
Detected in all
PALLD
ENSSSCG00000029331
ENSG00000129116
Palladin, cytoskeletal associated protein
Tissue enhanced
Detected in many
heart:
77.4
smooth muscle:
78.3
PARVA
ENSSSCG00000028827
ENSG00000197702
Parvin alpha
Tissue enhanced
Detected in all
smooth muscle:
89.0
PCDH18
ENSSSCG00000032749
ENSG00000189184
Protocadherin 18
Low tissue specificity
Detected in many
PCOLCE
ENSSSCG00000027466
ENSG00000106333
Procollagen C-endopeptidase enhancer
Tissue enhanced
Detected in many
cartilage:
123.2
synovial tissue:
132.1
PCOLCE2
ENSSSCG00000011683
ENSG00000163710
Procollagen C-endopeptidase enhancer 2
Tissue enriched
Detected in many
ovary:
107.9
PCSK5
ENSSSCG00000023520
ENSG00000099139
Proprotein convertase subtilisin/kexin type 5
Tissue enhanced
Detected in many
cartilage:
36.4
mesothelial tissue:
34.3
small intestine:
38.7
PDE3A
ENSSSCG00000028662
ENSG00000172572
CGMP-inhibited 3',5'-cyclic phosphodiesterase A
Tissue enhanced
Detected in many
heart:
78.3
PDE5A
ENSSSCG00000009106
ENSG00000138735
Phosphodiesterase 5A
Tissue enhanced
Detected in many
smooth muscle:
69.7
PDGFD
ENSSSCG00000014994
ENSG00000170962
Platelet derived growth factor D
Low tissue specificity
Detected in all
PDLIM7
ENSSSCG00000040507
ENSG00000196923
PDZ and LIM domain 7
Tissue enhanced
Detected in all
skeletal muscle:
228.4
smooth muscle:
135.2
PDZRN3
ENSSSCG00000011521
ENSG00000121440
PDZ domain containing ring finger 3
Low tissue specificity
Detected in many
PGM5
ENSSSCG00000005243
ENSG00000154330
Phosphoglucomutase 5
Tissue enhanced
Detected in many
ductus deferens:
87.8
smooth muscle:
116.8
urinary bladder:
103.9
PHEX
ENSSSCG00000012167
ENSG00000102174
Phosphate-regulating neutral endopeptidase
Tissue enhanced
Detected in many
aorta:
17.9
upper respiratory system:
18.1
PHLDB2
ENSSSCG00000022081
ENSG00000144824
Pleckstrin homology like domain family B member 2
Low tissue specificity
Detected in many
PI15
ENSSSCG00000006172
ENSG00000137558
Peptidase inhibitor 15
Tissue enhanced
Detected in many
cervix:
24.7
ductus deferens:
31.3
endometrium:
27.6
PI16
ENSSSCG00000001570
ENSG00000164530
Peptidase inhibitor 16 precursor
Group enriched
Detected in many
aorta:
78.7
mesothelial tissue:
207.1
PIP5K1A
ENSSSCG00000030547
ENSG00000143398
Phosphatidylinositol 4-phosphate 5-kinase type-1 alpha
Low tissue specificity
Detected in all
PKDCC
ENSSSCG00000008468
ENSG00000162878
Protein kinase domain containing, cytoplasmic
Low tissue specificity
Detected in all
PKN3
ENSSSCG00000005657
ENSG00000160447
Protein kinase N3
Tissue enhanced
Detected in many
cartilage:
67.6
PLAC9
ENSSSCG00000010332
ENSG00000189129
Placenta-specific protein 9 precursor
Tissue enhanced
Detected in many
synovial tissue:
71.4
PLAU
ENSSSCG00000010312
ENSG00000122861
Urokinase-type plasminogen activator precursor
Tissue enhanced
Detected in many
mesothelial tissue:
27.6
synovial tissue:
61.9
PLCD1
ENSSSCG00000027550
ENSG00000187091
1-phosphatidylinositol 4,5-bisphosphate phosphodiesterase delta-1
Tissue enhanced
Detected in all
cartilage:
55.6
PLD2
ENSSSCG00000017912
ENSG00000129219
Phospholipase D2
Low tissue specificity
Detected in all
PLEC
ENSSSCG00000039094
ENSG00000178209
Plectin
Low tissue specificity
Detected in all
PLEKHF1
ENSSSCG00000002852
ENSG00000166289
Pleckstrin homology and FYVE domain containing 1
Low tissue specificity
Detected in many
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