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Human disease related genes
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UMAP gene cluster
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Other diseases
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Subclass
Class
Biological process
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Disease
Keyword
Chromosome
1
2
3
4
5
6
7
8
9
10
11
12
13
14
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MT
Unmapped
X
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
Cartilage
Heart
Kidney
Large intestine
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Skin
Small intestine
Stomach 1
Upper respiratory system
Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
THE PIG ATLAS
TISSUE SPECIFIC PROTEOME
UMAP GENE CLUSTERING
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595 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
PLOD3
ENSSSCG00000028879
ENSG00000106397
Procollagen-lysine,2-oxoglutarate 5-dioxygenase 3
Low tissue specificity
Detected in all
PLSCR3
ENSSSCG00000029391
ENSG00000187838
Phospholipid scramblase 3
Low tissue specificity
Detected in all
PLVAP
ENSSSCG00000037025
ENSG00000130300
Plasmalemma vesicle associated protein
Tissue enhanced
Detected in all
lymphoid tissue:
112.6
POSTN
ENSSSCG00000009361
ENSG00000133110
Periostin isoform 1 precursor
Tissue enhanced
Detected in many
dura mater:
121.6
gallbladder:
82.5
mesothelial tissue:
89.0
upper respiratory system:
88.5
PPFIBP1
ENSSSCG00000000549
ENSG00000110841
PPFIA binding protein 1
Low tissue specificity
Detected in all
PPP1R12A
ENSSSCG00000038973
ENSG00000058272
Protein phosphatase 1 regulatory subunit 12A
Low tissue specificity
Detected in all
PPP1R15A
ENSSSCG00000003155
ENSG00000087074
Protein phosphatase 1 regulatory subunit 15A
Low tissue specificity
Detected in all
PPP1R3D
ENSSSCG00000007530
ENSG00000132825
Protein phosphatase 1 regulatory subunit 3D
Low tissue specificity
Detected in all
PRDM6
ENSSSCG00000014238
ENSG00000061455
PR/SET domain 6
Tissue enhanced
Detected in many
cervix:
23.2
smooth muscle:
34.7
urinary bladder:
29.3
PRRX2
ENSSSCG00000005680
ENSG00000167157
Paired related homeobox 2
Tissue enhanced
Detected in many
mesothelial tissue:
34.2
PRSS23
ENSSSCG00000014921
ENSG00000150687
Serine protease 23
Tissue enhanced
Detected in all
ovary:
56.4
PRSS57
ENSSSCG00000020780
ENSG00000185198
Serine protease 57
Tissue enhanced
Detected in many
bone marrow:
19.2
mesothelial tissue:
15.8
PTGIR
ENSSSCG00000026602
ENSG00000160013
Prostaglandin I2 receptor
Tissue enhanced
Detected in all
cartilage:
31.1
PTGIS
ENSSSCG00000007463
ENSG00000124212
Prostaglandin I2 synthase
Tissue enhanced
Detected in many
penis:
81.8
PTPN14
ENSSSCG00000015582
ENSG00000152104
Protein tyrosine phosphatase, non-receptor type 14
Low tissue specificity
Detected in many
PTPN21
ENSSSCG00000002425
ENSG00000070778
Protein tyrosine phosphatase, non-receptor type 21
Low tissue specificity
Detected in all
PTPRQ
ENSSSCG00000031716
ENSG00000139304
Protein tyrosine phosphatase, receptor type Q
Tissue enhanced
Detected in some
choroid plexus:
37.4
kidney:
21.3
mesothelial tissue:
74.0
PXDC1
ENSSSCG00000025582
ENSG00000168994
PX domain containing 1
Low tissue specificity
Detected in all
PXDN
ENSSSCG00000029570
ENSG00000130508
Peroxidasin
Tissue enhanced
Detected in many
adipose tissue:
32.7
ovary:
33.9
PXN
ENSSSCG00000040546
ENSG00000089159
Paxillin
Low tissue specificity
Detected in all
RAB34
ENSSSCG00000017769
ENSG00000109113
Ras-related protein Rab-34
Low tissue specificity
Detected in all
RARG
ENSSSCG00000000258
ENSG00000172819
Retinoic acid receptor gamma
Tissue enhanced
Detected in all
cartilage:
78.2
RASL11A
ENSSSCG00000039890
ENSG00000122035
RAS like family 11 member A
Low tissue specificity
Detected in all
RASSF3
ENSSSCG00000039060
ENSG00000153179
Ras association domain family member 3
Low tissue specificity
Detected in many
RBMS2
ENSSSCG00000000402
ENSG00000076067
RNA binding motif single stranded interacting protein 2
Low tissue specificity
Detected in all
RBMS3
ENSSSCG00000036381
ENSG00000144642
RNA binding motif single stranded interacting protein 3
Low tissue specificity
Detected in many
RBPJL
ENSSSCG00000037156
ENSG00000124232
Recombination signal binding protein for immunoglobulin kappa J region like
Tissue enhanced
Detected in some
lung:
4.3
skin:
5.0
thyroid gland:
16.5
RBPMS
ENSSSCG00000015846
ENSG00000157110
RNA binding protein, mRNA processing factor
Tissue enhanced
Detected in many
smooth muscle:
125.5
RBPMS2
ENSSSCG00000004549
ENSG00000166831
RNA binding protein, mRNA processing factor 2
Tissue enhanced
Detected in many
smooth muscle:
91.8
urinary bladder:
45.2
REM1
ENSSSCG00000028529
ENSG00000088320
RRAD and GEM like GTPase 1
Low tissue specificity
Detected in many
RGS2
ENSSSCG00000037241
ENSG00000116741
Regulator of G-protein signaling 2
Tissue enhanced
Detected in all
ductus deferens:
67.9
RHBDF1
ENSSSCG00000007968
ENSG00000007384
Rhomboid 5 homolog 1
Low tissue specificity
Detected in many
RHOBTB1
ENSSSCG00000028327
ENSG00000072422
Rho related BTB domain containing 1
Tissue enhanced
Detected in all
kidney:
43.5
male glands:
60.1
RHOJ
ENSSSCG00000022804
ENSG00000126785
Rho-related GTP-binding protein RhoJ
Low tissue specificity
Detected in many
RNF217
ENSSSCG00000021149
ENSG00000146373
Ring finger protein 217
Low tissue specificity
Detected in all
RNF39
ENSSSCG00000025208
ENSG00000204618
RING finger protein 39
Tissue enhanced
Detected in many
cornea:
42.2
ROR1
ENSSSCG00000003811
ENSG00000185483
Receptor tyrosine kinase like orphan receptor 1
Tissue enhanced
Detected in many
lens:
31.7
ROR2
ENSSSCG00000009593
ENSG00000169071
Receptor tyrosine kinase like orphan receptor 2
Tissue enhanced
Detected in many
cervix:
28.8
smooth muscle:
37.0
RRAS
ENSSSCG00000003183
ENSG00000126458
RAS related
Tissue enhanced
Detected in all
smooth muscle:
113.4
S100A11
ENSSSCG00000006610
ENSG00000163191
Protein S100-A11
Low tissue specificity
Detected in all
SCARA5
ENSSSCG00000009672
ENSG00000168079
Scavenger receptor class A member 5
Tissue enhanced
Detected in many
dura mater:
48.8
SEMA3C
ENSSSCG00000023784
ENSG00000075223
Semaphorin 3C
Tissue enhanced
Detected in many
cartilage:
97.2
SEMA4C
ENSSSCG00000008197
ENSG00000168758
Semaphorin 4C
Tissue enhanced
Detected in all
vagus nerve:
60.1
SERPINB8
ENSSSCG00000004888
ENSG00000166401
Serpin family B member 8
Tissue enhanced
Detected in many
adrenal gland:
32.7
ovary:
18.3
SERPINE1
ENSSSCG00000025698
ENSG00000106366
Plasminogen activator inhibitor 1 precursor
Tissue enriched
Detected in many
ovary:
397.7
SERPINE3
ENSSSCG00000009385
ENSG00000253309
Serpin family E member 3
Group enriched
Detected in some
adipose tissue:
46.5
gallbladder:
14.7
mesothelial tissue:
45.6
SERPINF1
ENSSSCG00000017818
ENSG00000132386
Pigment epithelium-derived factor precursor
Tissue enhanced
Detected in many
dura mater:
113.5
liver:
131.6
SERPING1
ENSSSCG00000013181
ENSG00000149131
Plasma protease C1 inhibitor precursor
Tissue enhanced
Detected in all
liver:
234.9
SERTAD1
ENSSSCG00000026931
ENSG00000197019
SERTA domain containing 1
Low tissue specificity
Detected in all
SH3D19
ENSSSCG00000009018
ENSG00000109686
SH3 domain containing 19
Low tissue specificity
Detected in many
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