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Gene name
Human disease related genes
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UMAP gene cluster
Pig tissue group category (RNA)
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Gene name
Class
Cancers
Cardiovascular diseases
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Endocrine and metabolic diseases
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Other congenital disorders
Other diseases
Reproductive system diseases
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Subclass
Class
Biological process
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Disease
Keyword
Chromosome
1
2
3
4
5
6
7
8
9
10
11
12
13
14
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MT
Unmapped
X
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
Cartilage
Heart
Kidney
Large intestine
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Skin
Small intestine
Stomach 1
Upper respiratory system
Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
THE PIG ATLAS
TISSUE SPECIFIC PROTEOME
UMAP GENE CLUSTERING
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595 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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1.
Select data columns:
Gene
Expand
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
2.
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
na
ENSSSCG00000031583
Tissue enhanced
Detected in many
heart:
13.0
smooth muscle:
10.7
na
ENSSSCG00000031591
Tissue enhanced
Detected in many
thyroid gland:
5.4
na
ENSSSCG00000031692
Tissue enhanced
Detected in many
ductus deferens:
51.4
heart:
66.5
skeletal muscle:
61.7
smooth muscle:
62.8
na
ENSSSCG00000031830
Tissue enhanced
Detected in many
smooth muscle:
151.1
na
ENSSSCG00000032343
Tissue enriched
Detected in many
liver:
138.1
na
ENSSSCG00000032383
Uncharacterized protein LOC100514340
Tissue enhanced
Detected in many
ductus deferens:
92.6
smooth muscle:
130.8
na
ENSSSCG00000032436
Low tissue specificity
Detected in many
na
ENSSSCG00000033190
ENSG00000240583,ENSG00000250424
Aquaporin-1
Tissue enhanced
Detected in many
cartilage:
98.0
na
ENSSSCG00000033299
ENSG00000196924
Tissue enhanced
Detected in many
smooth muscle:
320.4
na
ENSSSCG00000033521
Tissue enhanced
Detected in all
penis:
45.7
synovial tissue:
45.9
na
ENSSSCG00000033962
Low tissue specificity
Detected in many
na
ENSSSCG00000034367
Low tissue specificity
Detected in all
na
ENSSSCG00000034391
Tissue enhanced
Detected in many
epididymis:
13.6
na
ENSSSCG00000034765
Group enriched
Detected in many
cartilage:
65.3
vagus nerve:
26.4
na
ENSSSCG00000034790
ENSG00000163170
Low tissue specificity
Detected in many
na
ENSSSCG00000034949
Tissue enhanced
Detected in many
cartilage:
304.0
na
ENSSSCG00000035037
ENSG00000142178
Tissue enhanced
Detected in many
cartilage:
66.5
mesothelial tissue:
63.5
na
ENSSSCG00000035055
Tissue enhanced
Detected in all
cartilage:
53.9
na
ENSSSCG00000035291
Tissue enhanced
Detected in many
cartilage:
10.9
na
ENSSSCG00000035293
ENSG00000167244
Insulin-like growth factor II Insulin-like growth factor II Preptin
Tissue enhanced
Detected in many
aorta:
166.6
mesothelial tissue:
215.3
na
ENSSSCG00000035300
Tissue enhanced
Detected in many
liver:
84.9
smooth muscle:
73.6
na
ENSSSCG00000035308
Tissue enhanced
Detected in many
ductus deferens:
567.2
smooth muscle:
636.1
na
ENSSSCG00000035585
Low tissue specificity
Detected in all
na
ENSSSCG00000035669
ENSG00000185567
Tissue enhanced
Detected in many
cervix:
39.3
na
ENSSSCG00000035736
ENSG00000106178
C-C motif chemokine 24 precursor
Tissue enhanced
Detected in many
adipose tissue:
55.2
aorta:
36.5
mesothelial tissue:
44.9
na
ENSSSCG00000035903
Tissue enhanced
Detected in many
smooth muscle:
8.4
na
ENSSSCG00000036372
Low tissue specificity
Detected in many
na
ENSSSCG00000036378
Low tissue specificity
Detected in many
na
ENSSSCG00000036451
Low tissue specificity
Detected in all
na
ENSSSCG00000036498
ENSG00000137154
Low tissue specificity
Detected in many
na
ENSSSCG00000036505
Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-12
Low tissue specificity
Detected in many
na
ENSSSCG00000036842
Tissue enhanced
Detected in many
mesothelial tissue:
54.9
penis:
72.5
na
ENSSSCG00000037186
Tissue enhanced
Detected in some
cervix:
7.2
ductus deferens:
8.1
endometrium:
5.4
epididymis:
5.2
male glands:
5.0
na
ENSSSCG00000037390
Low tissue specificity
Detected in many
na
ENSSSCG00000037487
ENSG00000131471
Tissue enhanced
Detected in many
adipose tissue:
62.1
aorta:
67.8
bone marrow:
65.8
na
ENSSSCG00000037567
Tissue enhanced
Detected in many
aorta:
55.2
heart:
65.1
skeletal muscle:
55.1
na
ENSSSCG00000038540
ENSG00000183801
Low tissue specificity
Detected in many
na
ENSSSCG00000038786
ENSG00000197361
Tissue enhanced
Detected in many
smooth muscle:
34.9
na
ENSSSCG00000039134
Low tissue specificity
Detected in many
na
ENSSSCG00000039807
ENSG00000141574
Low tissue specificity
Detected in many
na
ENSSSCG00000039926
Tissue enhanced
Detected in many
cartilage:
74.9
na
ENSSSCG00000040563
Low tissue specificity
Detected in many
na
ENSSSCG00000040755
Tissue enhanced
Detected in many
cervix:
30.0
na
ENSSSCG00000040916
Low tissue specificity
Detected in many
NAB2
ENSSSCG00000000411
ENSG00000166886
NGFI-A binding protein 2
Low tissue specificity
Detected in many
NAGLU
ENSSSCG00000035147
ENSG00000108784
N-acetyl-alpha-glucosaminidase
Low tissue specificity
Detected in all
NFATC4
ENSSSCG00000001986
ENSG00000100968
Nuclear factor of activated T cells 4
Low tissue specificity
Detected in many
NFIB
ENSSSCG00000005190
ENSG00000147862
Nuclear factor I B
Low tissue specificity
Detected in all
NFIC
ENSSSCG00000036537
ENSG00000141905
Nuclear factor I C
Low tissue specificity
Detected in all
NFIL3
ENSSSCG00000009592
ENSG00000165030
Nuclear factor, interleukin 3 regulated
Low tissue specificity
Detected in many
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