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Keyword
Chromosome
1
2
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7
8
9
10
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MT
Unmapped
X
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
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Lymphoid tissue
Male glands
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Stomach 1
Upper respiratory system
Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
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TISSUE SPECIFIC PROTEOME
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595 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
EPHB4
ENSSSCG00000007675
ENSG00000196411
EPH receptor B4
Low tissue specificity
Detected in many
ERF
ENSSSCG00000032154
ENSG00000105722
ETS2 repressor factor
Low tissue specificity
Detected in all
ERRFI1
ENSSSCG00000035774
ENSG00000116285
ERBB receptor feedback inhibitor 1
Tissue enhanced
Detected in all
cartilage:
241.4
liver:
92.9
synovial tissue:
95.5
ESYT2
ENSSSCG00000016406
ENSG00000117868
Extended synaptotagmin 2
Low tissue specificity
Detected in all
ETS2
ENSSSCG00000038948
ENSG00000157557
ETS proto-oncogene 2, transcription factor
Low tissue specificity
Detected in many
EVA1B
ENSSSCG00000033892
ENSG00000142694
Eva-1 homolog B
Tissue enhanced
Detected in many
cartilage:
51.6
F13A1
ENSSSCG00000024310
ENSG00000124491
Coagulation factor XIII A chain
Tissue enhanced
Detected in many
skin:
36.9
upper respiratory system:
26.2
F2R
ENSSSCG00000035355
ENSG00000181104
Proteinase-activated receptor 1 precursor
Low tissue specificity
Detected in all
F2RL2
ENSSSCG00000037582
ENSG00000164220
Coagulation factor II thrombin receptor like 2
Tissue enhanced
Detected in many
cartilage:
63.5
FABP5
ENSSSCG00000006153
ENSG00000164687
Fatty acid-binding protein, epidermal
Tissue enriched
Detected in many
lens:
391.5
FAM111A
ENSSSCG00000033703
ENSG00000166801
Family with sequence similarity 111 member A
Low tissue specificity
Detected in many
FAM129A
ENSSSCG00000015567
ENSG00000135842
Protein Niban
Tissue enhanced
Detected in many
male glands:
84.4
salivary gland:
83.6
smooth muscle:
60.1
FAM20A
ENSSSCG00000017258
ENSG00000108950
FAM20A, golgi associated secretory pathway pseudokinase
Tissue enhanced
Detected in many
cartilage:
63.8
liver:
25.9
FAP
ENSSSCG00000015896
ENSG00000078098
Fibroblast activation protein alpha
Tissue enriched
Detected in many
cartilage:
50.6
FBLIM1
ENSSSCG00000003465
ENSG00000162458
Filamin binding LIM protein 1
Low tissue specificity
Detected in all
FBLN1
ENSSSCG00000000010
ENSG00000077942
Fibulin 1
Tissue enhanced
Detected in all
cartilage:
101.9
FBLN5
ENSSSCG00000002444
ENSG00000140092
Fibulin 5
Tissue enhanced
Detected in many
ovary:
46.7
FBN1
ENSSSCG00000004658
ENSG00000166147
Fibrillin-1 precursor
Tissue enhanced
Detected in many
mesothelial tissue:
106.5
FGF18
ENSSSCG00000016997
ENSG00000156427
Fibroblast growth factor 18
Tissue enhanced
Detected in many
cartilage:
43.5
FHL2
ENSSSCG00000008147
ENSG00000115641
Four and a half LIM domains 2
Tissue enhanced
Detected in many
heart:
123.6
FHL3
ENSSSCG00000003644
ENSG00000183386
Four and a half LIM domains protein 3
Tissue enriched
Detected in many
skeletal muscle:
172.7
FILIP1L
ENSSSCG00000011972
ENSG00000168386
Filamin A interacting protein 1 like
Low tissue specificity
Detected in all
FLNC
ENSSSCG00000016578
ENSG00000128591
Filamin C
Tissue enhanced
Detected in many
heart:
70.9
skeletal muscle:
158.2
smooth muscle:
105.3
FLT4
ENSSSCG00000014007
ENSG00000037280
Fms related tyrosine kinase 4
Low tissue specificity
Detected in many
FN1
ENSSSCG00000016174
ENSG00000115414
Fibronectin 1
Tissue enhanced
Detected in many
adipose tissue:
168.3
male glands:
433.9
synovial tissue:
420.5
FNDC1
ENSSSCG00000004052
ENSG00000164694
Fibronectin type III domain containing 1
Tissue enhanced
Detected in many
dura mater:
58.1
mesothelial tissue:
57.0
synovial tissue:
45.8
FOS
ENSSSCG00000002383
ENSG00000170345
Proto-oncogene c-Fos
Tissue enhanced
Detected in many
aorta:
123.9
synovial tissue:
121.3
FOSB
ENSSSCG00000031616
ENSG00000125740
FosB proto-oncogene, AP-1 transcription factor subunit
Tissue enhanced
Detected in many
aorta:
129.4
cartilage:
83.1
synovial tissue:
89.9
FOSL2
ENSSSCG00000032527
ENSG00000075426
Fos-related antigen 2
Tissue enhanced
Detected in many
adrenal gland:
103.3
FOXF1
ENSSSCG00000038460
ENSG00000103241
Forkhead box F1
Tissue enhanced
Detected in many
gallbladder:
34.5
smooth muscle:
40.2
urinary bladder:
40.6
FOXJ2
ENSSSCG00000039580
ENSG00000065970
Forkhead box J2
Low tissue specificity
Detected in all
FOXL1
ENSSSCG00000002658
ENSG00000176678
Forkhead box L1
Tissue enhanced
Detected in many
cartilage:
16.4
penis:
16.0
urinary bladder:
23.1
FOXO1
ENSSSCG00000009370
ENSG00000150907
Forkhead box O1
Low tissue specificity
Detected in all
FOXO3
ENSSSCG00000004387
ENSG00000118689
Forkhead box protein O3
Low tissue specificity
Detected in all
FOXP2
ENSSSCG00000016639
ENSG00000128573
Forkhead box protein P2
Tissue enhanced
Detected in many
smooth muscle:
59.6
FRMD6
ENSSSCG00000005027
ENSG00000139926
FERM domain containing 6
Low tissue specificity
Detected in all
FST
ENSSSCG00000016892
ENSG00000134363
Follistatin precursor
Tissue enriched
Detected in many
ovary:
68.9
G0S2
ENSSSCG00000015617
ENSG00000123689
G0/G1 switch protein 2
Tissue enhanced
Detected in many
bone marrow:
44.5
liver:
48.4
GADD45B
ENSSSCG00000022689
ENSG00000099860
Growth arrest and DNA damage inducible beta
Low tissue specificity
Detected in all
GADD45G
ENSSSCG00000035249
ENSG00000130222
Growth arrest and DNA damage-inducible protein GADD45 gamma
Tissue enhanced
Detected in many
gallbladder:
38.0
GAS1
ENSSSCG00000033321
ENSG00000180447
Growth arrest specific 1
Tissue enhanced
Detected in many
cartilage:
79.4
mesothelial tissue:
89.8
GATA2
ENSSSCG00000011618
ENSG00000179348
Endothelial transcription factor GATA-2
Tissue enriched
Detected in many
male glands:
214.6
GBX1
ENSSSCG00000032249
ENSG00000164900
Gastrulation brain homeobox 1
Tissue enhanced
Detected in many
mesothelial tissue:
9.6
GEM
ENSSSCG00000006105
ENSG00000164949
GTP binding protein overexpressed in skeletal muscle
Tissue enhanced
Detected in many
cartilage:
62.6
GJC1
ENSSSCG00000021306
ENSG00000182963
Gap junction gamma-1 protein
Tissue enhanced
Detected in many
smooth muscle:
33.0
GJD3
ENSSSCG00000017474
ENSG00000183153
Gap junction protein delta 3
Tissue enhanced
Detected in many
endometrium:
4.0
mouth:
3.7
GLI2
ENSSSCG00000015733
ENSG00000074047
Zinc finger protein GLI2
Tissue enhanced
Detected in many
cartilage:
43.7
GNG11
ENSSSCG00000015324
ENSG00000127920
G protein subunit gamma 11
Low tissue specificity
Detected in many
GOLIM4
ENSSSCG00000011741
ENSG00000173905
Golgi integral membrane protein 4
Low tissue specificity
Detected in all
GPR20
ENSSSCG00000021284
ENSG00000204882
G protein-coupled receptor 20
Tissue enhanced
Detected in many
cervix:
17.8
penis:
18.0
smooth muscle:
18.7
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