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UMAP gene cluster
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Subclass
Class
Biological process
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Disease
Keyword
Chromosome
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
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18
MT
Unmapped
X
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
Cartilage
Heart
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Large intestine
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Skin
Small intestine
Stomach 1
Upper respiratory system
Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
THE PIG ATLAS
TISSUE SPECIFIC PROTEOME
UMAP GENE CLUSTERING
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595 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
COL1A1
ENSSSCG00000036135
ENSG00000108821
Collagen type I alpha 1 chain
Tissue enhanced
Detected in many
dura mater:
410.3
COL1A2
ENSSSCG00000015326
ENSG00000164692
Collagen alpha-2(I) chain precursor
Tissue enhanced
Detected in many
dura mater:
322.8
COL27A1
ENSSSCG00000005487
ENSG00000196739
Collagen type XXVII alpha 1 chain
Tissue enriched
Detected in many
cartilage:
132.1
COL3A1
ENSSSCG00000016034
ENSG00000168542
Collagen alpha-1(III) chain precursor
Tissue enhanced
Detected in many
dura mater:
260.5
mesothelial tissue:
240.6
COL4A2
ENSSSCG00000009545
ENSG00000134871
Collagen type IV alpha 2 chain
Tissue enhanced
Detected in many
adipose tissue:
88.3
lens:
90.1
COL5A1
ENSSSCG00000005751
ENSG00000130635
Collagen alpha-1(V) chain precursor
Tissue enhanced
Detected in many
cartilage:
124.1
COL5A2
ENSSSCG00000016035
ENSG00000204262
Collagen alpha-2(V) chain precursor
Tissue enhanced
Detected in many
ovary:
74.6
COL6A2
ENSSSCG00000028022
ENSG00000142173
Collagen type VI alpha 2 chain
Tissue enhanced
Detected in all
cartilage:
281.6
synovial tissue:
155.1
COL6A3
ENSSSCG00000027331
ENSG00000163359
Collagen type VI alpha 3 chain
Tissue enhanced
Detected in many
cornea:
101.7
CPAMD8
ENSSSCG00000013869
ENSG00000160111
C3 and PZP like, alpha-2-macroglobulin domain containing 8
Tissue enhanced
Detected in many
cartilage:
25.2
cervix:
18.1
ductus deferens:
19.3
lymphoid tissue:
19.7
synovial tissue:
19.4
CPED1
ENSSSCG00000016618
ENSG00000106034
Cadherin like and PC-esterase domain containing 1
Low tissue specificity
Detected in many
CREM
ENSSSCG00000011106
ENSG00000095794
CAMP responsive element modulator
Tissue enriched
Detected in all
testis:
83.2
CRIP2
ENSSSCG00000038713
ENSG00000182809
Cysteine rich protein 2
Tissue enhanced
Detected in all
heart:
157.2
CRISPLD2
ENSSSCG00000002669
ENSG00000103196
Cysteine rich secretory protein LCCL domain containing 2
Tissue enhanced
Detected in many
cartilage:
64.7
CRLF1
ENSSSCG00000013909
ENSG00000006016
Cytokine receptor like factor 1
Tissue enhanced
Detected in many
cornea:
37.9
penis:
22.3
CRTC3
ENSSSCG00000034090
ENSG00000140577
CREB regulated transcription coactivator 3
Low tissue specificity
Detected in all
CSRNP1
ENSSSCG00000011264
ENSG00000144655
Cysteine and serine rich nuclear protein 1
Low tissue specificity
Detected in many
CXCL2
ENSSSCG00000008959
C-X-C motif chemokine 2 precursor
Tissue enhanced
Detected in all
adrenal gland:
51.3
CYBRD1
ENSSSCG00000025049
ENSG00000071967
Cytochrome b reductase 1
Low tissue specificity
Detected in all
CYP21A2
ENSSSCG00000001428
ENSG00000231852
Steroid 21-hydroxylase
Tissue enriched
Detected in many
adrenal gland:
367.3
CYP8B1
ENSSSCG00000034388
ENSG00000180432
5-beta-cholestane-3-alpha,7-alpha-diol 12-alpha-hydroxylase
Tissue enriched
Detected in some
epididymis:
58.8
CYR61
ENSSSCG00000006940
ENSG00000142871
Cysteine rich angiogenic inducer 61
Tissue enhanced
Detected in many
cartilage:
155.3
DACT1
ENSSSCG00000031856
ENSG00000165617
Dishevelled binding antagonist of beta catenin 1
Low tissue specificity
Detected in many
DCN
ENSSSCG00000000915
ENSG00000011465
Decorin precursor
Group enriched
Detected in many
cartilage:
321.1
cornea:
591.4
DCUN1D3
ENSSSCG00000007854
ENSG00000188215
Defective in cullin neddylation 1 domain containing 3
Low tissue specificity
Detected in all
DDI1
ENSSSCG00000014995
ENSG00000170967
DNA damage inducible 1 homolog 1
Tissue enriched
Detected in many
testis:
57.0
DDIT3
ENSSSCG00000040751
ENSG00000175197
DNA damage-inducible transcript 3 protein
Low tissue specificity
Detected in all
DDIT4
ENSSSCG00000031888
ENSG00000168209
DNA damage-inducible transcript 4 protein
Tissue enriched
Detected in all
cartilage:
191.5
DENND2C
ENSSSCG00000006755
ENSG00000175984
DENN domain containing 2C
Tissue enhanced
Detected in many
cornea:
21.5
mouth:
19.6
skin:
41.0
DES
ENSSSCG00000020785
ENSG00000175084
Desmin
Tissue enhanced
Detected in many
skeletal muscle:
301.6
smooth muscle:
547.0
urinary bladder:
220.0
DISP1
ENSSSCG00000035479
ENSG00000154309
Dispatched RND transporter family member 1
Tissue enhanced
Detected in all
cartilage:
65.0
DLX4
ENSSSCG00000034653
ENSG00000108813
Distal-less homeobox 4
Tissue enhanced
Detected in many
synovial tissue:
25.0
DMPK
ENSSSCG00000038969
ENSG00000104936
DM1 protein kinase
Tissue enhanced
Detected in all
smooth muscle:
96.2
DNAJB1
ENSSSCG00000013784
ENSG00000132002
DnaJ homolog subfamily B member 1
Low tissue specificity
Detected in all
DPT
ENSSSCG00000035937
ENSG00000143196
Dermatopontin
Tissue enhanced
Detected in many
heart:
31.6
smooth muscle:
49.4
DUSP1
ENSSSCG00000016991
ENSG00000120129
Dual specificity protein phosphatase 1
Tissue enhanced
Detected in all
male glands:
173.1
DVL3
ENSSSCG00000025374
ENSG00000161202
Dishevelled segment polarity protein 3
Low tissue specificity
Detected in all
ECM1
ENSSSCG00000029230
ENSG00000143369
Extracellular matrix protein 1
Tissue enhanced
Detected in many
mouth:
84.5
synovial tissue:
66.5
EEPD1
ENSSSCG00000039703
ENSG00000122547
Endonuclease/exonuclease/phosphatase family domain containing 1
Tissue enhanced
Detected in many
adipose tissue:
46.7
skeletal muscle:
33.4
EFNA5
ENSSSCG00000036520
ENSG00000184349
Ephrin A5
Low tissue specificity
Detected in many
EFNB2
ENSSSCG00000009535
ENSG00000125266
Ephrin-B2
Low tissue specificity
Detected in all
EHD2
ENSSSCG00000023371
ENSG00000024422
EH domain containing 2
Tissue enhanced
Detected in many
adipose tissue:
96.4
EHD4
ENSSSCG00000020666
ENSG00000103966
EH domain containing 4
Tissue enhanced
Detected in many
heart:
46.2
ELN
ENSSSCG00000025858
ENSG00000049540
Elastin precursor
Tissue enriched
Detected in many
cartilage:
455.5
EMD
ENSSSCG00000037777
ENSG00000102119
Emerin
Low tissue specificity
Detected in all
EMILIN1
ENSSSCG00000008557
ENSG00000138080
Elastin microfibril interfacer 1
Tissue enhanced
Detected in many
lymphoid tissue:
49.3
smooth muscle:
48.5
EMILIN2
ENSSSCG00000003694
ENSG00000132205
Elastin microfibril interfacer 2
Tissue enhanced
Detected in many
ovary:
49.3
EMP2
ENSSSCG00000037065
ENSG00000213853
Epithelial membrane protein 2
Low tissue specificity
Detected in all
EMP3
ENSSSCG00000023377
ENSG00000142227
Epithelial membrane protein 3
Tissue enhanced
Detected in all
cartilage:
33.7
synovial tissue:
63.2
ENPP1
ENSSSCG00000004193
ENSG00000197594
Ectonucleotide pyrophosphatase/phosphodiesterase 1
Tissue enriched
Detected in many
cartilage:
130.3
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