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Keyword
Chromosome
1
2
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5
6
7
8
9
10
11
12
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MT
Unmapped
X
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
Cartilage
Heart
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Large intestine
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Skin
Small intestine
Stomach 1
Upper respiratory system
Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
THE PIG ATLAS
TISSUE SPECIFIC PROTEOME
UMAP GENE CLUSTERING
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595 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
GPX3
ENSSSCG00000036438
ENSG00000211445
Glutathione peroxidase 3 precursor
Group enriched
Detected in many
kidney:
521.1
ovary:
496.9
GRB10
ENSSSCG00000015631
ENSG00000106070
Growth factor receptor-bound protein 10
Low tissue specificity
Detected in all
GREM1
ENSSSCG00000033657
ENSG00000166923
Gremlin 1, DAN family BMP antagonist
Tissue enhanced
Detected in many
cartilage:
38.7
gallbladder:
38.9
kidney:
37.6
small intestine:
50.0
smooth muscle:
39.8
GSN
ENSSSCG00000037508
ENSG00000148180
Gelsolin
Tissue enhanced
Detected in all
cartilage:
266.2
heart:
223.1
penis:
327.1
GXYLT2
ENSSSCG00000011519
ENSG00000172986
Glucoside xylosyltransferase 2
Low tissue specificity
Detected in many
HAND1
ENSSSCG00000031080
ENSG00000113196
Heart- and neural crest derivatives-expressed protein 1
Tissue enhanced
Detected in some
heart:
10.2
small intestine:
11.4
smooth muscle:
46.6
urinary bladder:
19.1
HAND2
ENSSSCG00000031537
ENSG00000164107
Heart and neural crest derivatives expressed 2
Tissue enhanced
Detected in many
adrenal gland:
35.3
gallbladder:
38.2
heart:
75.3
HBEGF
ENSSSCG00000014362
ENSG00000113070
Proheparin-binding EGF-like growth factor Heparin-binding EGF-like growth factor
Tissue enhanced
Detected in all
cartilage:
33.7
synovial tissue:
78.6
HEG1
ENSSSCG00000011859
ENSG00000173706
Heart development protein with EGF like domains 1
Low tissue specificity
Detected in all
HIC1
ENSSSCG00000025717
ENSG00000177374
HIC ZBTB transcriptional repressor 1
Low tissue specificity
Detected in many
HLX
ENSSSCG00000032644
ENSG00000136630
H2.0 like homeobox
Tissue enhanced
Detected in many
bone marrow:
24.1
HMCN2
ENSSSCG00000005699
ENSG00000148357
Hemicentin 2
Tissue enhanced
Detected in many
cervix:
35.8
skeletal muscle:
30.9
HPSE2
ENSSSCG00000010535
ENSG00000172987
Heparanase 2 (inactive)
Tissue enriched
Detected in many
cervix:
86.3
HRCT1
ENSSSCG00000035720
ENSG00000196196
Histidine rich carboxyl terminus 1
Tissue enhanced
Detected in many
penis:
46.2
HSD3B7
ENSSSCG00000032369
ENSG00000099377
Hydroxy-delta-5-steroid dehydrogenase, 3 beta- and steroid delta-isomerase 7
Tissue enhanced
Detected in all
cartilage:
54.8
HSPB1
ENSSSCG00000039962
ENSG00000106211
Heat shock protein beta-1
Low tissue specificity
Detected in all
HSPB6
ENSSSCG00000023498
ENSG00000004776
Heat shock protein family B (small) member 6
Tissue enhanced
Detected in many
skeletal muscle:
207.1
smooth muscle:
238.3
HSPG2
ENSSSCG00000003514
ENSG00000142798
Heparan sulfate proteoglycan 2
Low tissue specificity
Detected in many
HTRA3
ENSSSCG00000008723
ENSG00000170801
Serine protease HTRA3 precursor
Tissue enhanced
Detected in many
lens:
46.6
mesothelial tissue:
88.8
ID3
ENSSSCG00000039514
ENSG00000117318
DNA-binding protein inhibitor ID-3
Low tissue specificity
Detected in all
IER2
ENSSSCG00000013753
ENSG00000160888
Immediate early response 2
Low tissue specificity
Detected in many
IER5L
ENSSSCG00000005673
ENSG00000188483
Immediate early response 5 like
Low tissue specificity
Detected in many
IFITM3
ENSSSCG00000038912
Interferon-induced transmembrane protein 3
Low tissue specificity
Detected in many
IFRD1
ENSSSCG00000016646
ENSG00000006652
Interferon-related developmental regulator 1
Low tissue specificity
Detected in all
IGF1
ENSSSCG00000000857
ENSG00000017427
Insulin-like growth factor I precursor
Tissue enhanced
Detected in many
adipose tissue:
73.1
IGFBP2
ENSSSCG00000035392
ENSG00000115457
Insulin-like growth factor-binding protein 2
Tissue enhanced
Detected in many
choroid plexus:
61.1
cornea:
73.1
liver:
114.0
IGFBP3
ENSSSCG00000038783
ENSG00000146674
Insulin-like growth factor-binding protein 3
Tissue enhanced
Detected in many
upper respiratory system:
84.2
urinary bladder:
77.7
IGFBP4
ENSSSCG00000017472
ENSG00000141753
Insulin-like growth factor-binding protein 4 precursor
Tissue enhanced
Detected in many
ovary:
147.0
IGFBP5
ENSSSCG00000025924
ENSG00000115461
Insulin-like growth factor-binding protein 5 precursor
Tissue enhanced
Detected in all
cartilage:
254.5
cervix:
156.6
IGFBP7
ENSSSCG00000008913
ENSG00000163453
Insulin-like growth factor-binding protein 7 precursor
Low tissue specificity
Detected in all
IGSF10
ENSSSCG00000011717
ENSG00000152580
Immunoglobulin superfamily member 10
Tissue enhanced
Detected in many
cartilage:
33.4
gallbladder:
21.3
synovial tissue:
36.1
IL13RA1
ENSSSCG00000012633
ENSG00000131724
Interleukin-13 receptor subunit alpha-1 precursor
Low tissue specificity
Detected in many
IL1R1
ENSSSCG00000008162
ENSG00000115594
Interleukin 1 receptor type 1
Tissue enhanced
Detected in all
liver:
74.2
INCA1
ENSSSCG00000017901
ENSG00000196388
Inhibitor of CDK, cyclin A1 interacting protein 1
Low tissue specificity
Detected in all
ISLR
ENSSSCG00000001910
ENSG00000129009
Immunoglobulin superfamily containing leucine rich repeat
Tissue enhanced
Detected in many
cartilage:
98.7
vagus nerve:
73.3
ITGA1
ENSSSCG00000016885
ENSG00000213949
Integrin subunit alpha 1
Tissue enhanced
Detected in many
cartilage:
56.4
smooth muscle:
85.1
ITGA11
ENSSSCG00000004961
ENSG00000137809
Integrin subunit alpha 11
Tissue enhanced
Detected in many
dura mater:
26.8
ITGA5
ENSSSCG00000000293
ENSG00000161638
Integrin subunit alpha 5
Tissue enhanced
Detected in many
ovary:
54.9
ITGA8
ENSSSCG00000011046
ENSG00000077943
Integrin subunit alpha 8
Tissue enhanced
Detected in many
cervix:
61.7
endometrium:
34.7
fallopian tube:
40.9
ITGA9
ENSSSCG00000011245
ENSG00000144668
Integrin subunit alpha 9
Tissue enhanced
Detected in many
liver:
66.6
lymphoid tissue:
63.5
ITGB3
ENSSSCG00000017306
ENSG00000259207
Integrin beta-3 precursor
Tissue enhanced
Detected in all
dura mater:
31.3
ovary:
30.1
ITIH3
ENSSSCG00000011451
ENSG00000162267
Inter-alpha-trypsin inhibitor heavy chain H3 precursor
Tissue enriched
Detected in many
liver:
105.3
ITIH4
ENSSSCG00000011453
ENSG00000055955
Inter-alpha-trypsin inhibitor heavy chain H4 precursor
Tissue enhanced
Detected in many
cervix:
61.4
liver:
161.3
ITIH5
ENSSSCG00000011129
ENSG00000123243
Inter-alpha-trypsin inhibitor heavy chain family member 5
Low tissue specificity
Detected in all
ITPRIPL2
ENSSSCG00000039337
ENSG00000205730
ITPRIP like 2
Low tissue specificity
Detected in all
JAG1
ENSSSCG00000007067
ENSG00000101384
Jagged 1
Low tissue specificity
Detected in all
JDP2
ENSSSCG00000035895
ENSG00000140044
Jun dimerization protein 2
Low tissue specificity
Detected in many
JMY
ENSSSCG00000014112
ENSG00000152409
Junction mediating and regulatory protein, p53 cofactor
Tissue enhanced
Detected in all
cervix:
59.5
JUNB
ENSSSCG00000013735
ENSG00000171223
JunB proto-oncogene, AP-1 transcription factor subunit
Tissue enhanced
Detected in many
synovial tissue:
110.7
KANK1
ENSSSCG00000005235
ENSG00000107104
KN motif and ankyrin repeat domains 1
Low tissue specificity
Detected in all
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