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Chromosome
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
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Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
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Breast
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Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
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Heart
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Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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595 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
BHLHE40
ENSSSCG00000036136
ENSG00000134107
Class E basic helix-loop-helix protein 40
Tissue enhanced
Detected in all
cartilage:
156.2
synovial tissue:
70.3
BICD2
ENSSSCG00000027166
ENSG00000185963
BICD cargo adaptor 2
Low tissue specificity
Detected in all
BMP1
ENSSSCG00000009620
ENSG00000168487
Bone morphogenetic protein 1
Tissue enhanced
Detected in many
cartilage:
47.6
ovary:
59.8
BMP2
ENSSSCG00000039442
ENSG00000125845
Bone morphogenetic protein 2 precursor
Tissue enriched
Detected in many
cartilage:
70.8
BMP4
ENSSSCG00000005045
ENSG00000125378
Bone morphogenetic protein 4 precursor
Low tissue specificity
Detected in many
BMP6
ENSSSCG00000001027
ENSG00000153162
Bone morphogenetic protein 6 precursor
Tissue enriched
Detected in many
cartilage:
84.5
BNC2
ENSSSCG00000005180
ENSG00000173068
Basonuclin 2
Tissue enhanced
Detected in many
cervix:
56.7
BOK
ENSSSCG00000032684
ENSG00000176720
BOK, BCL2 family apoptosis regulator
Tissue enhanced
Detected in all
thyroid gland:
55.8
BRF2
ENSSSCG00000040833
ENSG00000104221
BRF2, RNA polymerase III transcription initiation factor subunit
Low tissue specificity
Detected in all
BST1
ENSSSCG00000028359
ENSG00000109743
Bone marrow stromal cell antigen 1
Low tissue specificity
Detected in many
BTG2
ENSSSCG00000028322
ENSG00000159388
Protein BTG2
Low tissue specificity
Detected in many
C1orf115
ENSSSCG00000027882
ENSG00000162817
Chromosome 1 open reading frame 115
Tissue enhanced
Detected in many
small intestine:
52.4
C1QTNF1
ENSSSCG00000035511
ENSG00000173918
C1q and TNF related 1
Low tissue specificity
Detected in many
C1QTNF2
ENSSSCG00000035993
ENSG00000145861
Complement C1q tumor necrosis factor-related protein 2 precursor
Low tissue specificity
Detected in all
C1QTNF7
ENSSSCG00000008737
ENSG00000163145
Complement C1q tumor necrosis factor-related protein 7 precursor
Tissue enhanced
Detected in many
cornea:
30.9
C1R
ENSSSCG00000000675
ENSG00000159403
Complement C1r
Tissue enhanced
Detected in many
liver:
178.7
C1S
ENSSSCG00000039847
ENSG00000182326
Complement C1s subcomponent precursor
Tissue enhanced
Detected in all
liver:
141.3
C5AR2
ENSSSCG00000003113
ENSG00000134830
Complement component 5a receptor 2
Tissue enhanced
Detected in many
cartilage:
39.6
penis:
16.1
C9orf3
ENSSSCG00000010943
ENSG00000148120
Chromosome 9 open reading frame 3
Low tissue specificity
Detected in all
CALD1
ENSSSCG00000016535
ENSG00000122786
Caldesmon 1
Tissue enhanced
Detected in all
smooth muscle:
183.5
CALHM2
ENSSSCG00000010600
ENSG00000138172
Calcium homeostasis modulator family member 2
Low tissue specificity
Detected in many
CARD10
ENSSSCG00000025260
ENSG00000100065
Caspase recruitment domain family member 10
Low tissue specificity
Detected in many
CAST
ENSSSCG00000014170
ENSG00000153113
Calpastatin
Low tissue specificity
Detected in all
CASTOR1
ENSSSCG00000009998
ENSG00000239282
Cytosolic arginine sensor for mTORC1 subunit 1
Low tissue specificity
Detected in all
CAVIN1
ENSSSCG00000035446
ENSG00000177469
Caveolae associated protein 1
Low tissue specificity
Detected in many
CAVIN2
ENSSSCG00000026618
ENSG00000168497
Caveolae associated protein 2
Tissue enhanced
Detected in many
smooth muscle:
63.8
CAVIN3
ENSSSCG00000014633
ENSG00000170955
Caveolae associated protein 3
Low tissue specificity
Detected in many
CCBE1
ENSSSCG00000004907
ENSG00000183287
Collagen and calcium binding EGF domains 1
Tissue enriched
Detected in many
adrenal gland:
69.4
CCDC80
ENSSSCG00000011928
ENSG00000091986
Coiled-coil domain containing 80
Tissue enhanced
Detected in many
cartilage:
103.3
lens:
84.5
mesothelial tissue:
100.8
CCL26
ENSSSCG00000039874
ENSG00000006606
C-C motif chemokine 26 precursor
Tissue enhanced
Detected in many
cartilage:
27.6
CD209
ENSSSCG00000013579
CD209 antigen
Tissue enhanced
Detected in many
adipose tissue:
44.0
synovial tissue:
90.7
CD248
ENSSSCG00000029949
ENSG00000174807
CD248 molecule
Tissue enhanced
Detected in many
mesothelial tissue:
60.5
synovial tissue:
66.7
CD99
ENSSSCG00000039894
ENSG00000002586
CD99 molecule (Xg blood group)
Low tissue specificity
Detected in all
CDC42EP3
ENSSSCG00000021359
ENSG00000163171
CDC42 effector protein 3
Low tissue specificity
Detected in all
CDKN1A
ENSSSCG00000001565
ENSG00000124762
Cyclin dependent kinase inhibitor 1A
Tissue enhanced
Detected in many
choroid plexus:
88.1
CDON
ENSSSCG00000022504
ENSG00000064309
Cell adhesion associated, oncogene regulated
Tissue enhanced
Detected in many
cartilage:
107.4
mesothelial tissue:
70.4
CEBPB
ENSSSCG00000034207
ENSG00000172216
CCAAT/enhancer-binding protein beta
Low tissue specificity
Detected in many
CEBPD
ENSSSCG00000032367
ENSG00000221869
CCAAT/enhancer binding protein delta
Tissue enhanced
Detected in many
mesothelial tissue:
76.8
CHST14
ENSSSCG00000004771
ENSG00000169105
Carbohydrate sulfotransferase 14
Low tissue specificity
Detected in all
CHST7
ENSSSCG00000012265
ENSG00000147119
Carbohydrate sulfotransferase 7
Tissue enhanced
Detected in many
cartilage:
24.3
CILP
ENSSSCG00000004928
ENSG00000138615
Cartilage intermediate layer protein
Tissue enriched
Detected in some
cartilage:
332.4
CLEC11A
ENSSSCG00000036814
ENSG00000105472
C-type lectin domain containing 11A
Low tissue specificity
Detected in all
CLMP
ENSSSCG00000022961
ENSG00000166250
CXADR like membrane protein
Tissue enhanced
Detected in all
cervix:
64.3
CNN1
ENSSSCG00000013614
ENSG00000130176
Calponin-1
Tissue enhanced
Detected in many
smooth muscle:
549.0
urinary bladder:
230.6
CNTLN
ENSSSCG00000005178
ENSG00000044459
Centlein
Low tissue specificity
Detected in all
COL12A1
ENSSSCG00000004484
ENSG00000111799
Collagen type XII alpha 1 chain
Tissue enhanced
Detected in many
cartilage:
157.9
COL13A1
ENSSSCG00000010256
ENSG00000197467
Collagen type XIII alpha 1 chain
Tissue enhanced
Detected in many
cervix:
36.3
COL14A1
ENSSSCG00000005997
ENSG00000187955
Collagen type XIV alpha 1 chain
Low tissue specificity
Detected in all
COL15A1
ENSSSCG00000005380
ENSG00000204291
Collagen type XV alpha 1 chain
Tissue enhanced
Detected in many
cartilage:
116.3
COL16A1
ENSSSCG00000003603
ENSG00000084636
Collagen type XVI alpha 1 chain
Tissue enriched
Detected in many
cartilage:
140.4
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