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Keyword
Chromosome
1
2
3
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5
6
7
8
9
10
11
12
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14
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MT
Unmapped
X
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
Cartilage
Heart
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Large intestine
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Skin
Small intestine
Stomach 1
Upper respiratory system
Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
THE PIG ATLAS
TISSUE SPECIFIC PROTEOME
UMAP GENE CLUSTERING
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415 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
PLAT
ENSSSCG00000007032
ENSG00000104368
Tissue-type plasminogen activator precursor
Low tissue specificity
Detected in many
PLCD3
ENSSSCG00000017338
ENSG00000161714
Phospholipase C delta 3
Low tissue specificity
Detected in all
PLEKHA4
ENSSSCG00000003137
ENSG00000105559
Pleckstrin homology domain containing A4
Tissue enriched
Detected in many
vagus nerve:
103.3
PLEKHH2
ENSSSCG00000008456
ENSG00000152527
Pleckstrin homology, MyTH4 and FERM domain containing H2
Low tissue specificity
Detected in all
PLSCR4
ENSSSCG00000011690
ENSG00000114698
Phospholipid scramblase 4
Low tissue specificity
Detected in all
PLXDC1
ENSSSCG00000017511
ENSG00000161381
Plexin domain containing 1
Tissue enhanced
Detected in many
cervix:
31.1
synovial tissue:
58.1
PLXDC2
ENSSSCG00000032444
ENSG00000120594
Plexin domain containing 2
Low tissue specificity
Detected in all
PODNL1
ENSSSCG00000013762
ENSG00000132000
Podocan like 1
Tissue enhanced
Detected in many
cartilage:
24.7
vagus nerve:
31.8
PPP1R12B
ENSSSCG00000010925
ENSG00000077157
Protein phosphatase 1 regulatory subunit 12B
Tissue enhanced
Detected in all
smooth muscle:
91.9
PPP1R3E
ENSSSCG00000032977
ENSG00000235194
Protein phosphatase 1 regulatory subunit 3E
Low tissue specificity
Detected in all
PRELP
ENSSSCG00000015271
ENSG00000188783
Proline and arginine rich end leucine rich repeat protein
Tissue enriched
Detected in many
cartilage:
236.7
PROCR
ENSSSCG00000026585
ENSG00000101000
Endothelial protein C receptor precursor
Tissue enhanced
Detected in all
cartilage:
40.2
PROS1
ENSSSCG00000025463
ENSG00000184500
Protein S
Tissue enhanced
Detected in all
choroid plexus:
61.8
liver:
44.4
PRRX1
ENSSSCG00000031503
ENSG00000116132
Paired related homeobox 1
Tissue enhanced
Detected in many
cervix:
63.8
dura mater:
70.7
PRX
ENSSSCG00000038439
ENSG00000105227
Periaxin
Group enriched
Detected in many
lens:
104.5
vagus nerve:
161.0
PTCH2
ENSSSCG00000031977
ENSG00000117425
Patched 2
Tissue enhanced
Detected in many
cartilage:
28.8
PTGFRN
ENSSSCG00000006735
ENSG00000134247
Prostaglandin F2 receptor inhibitor
Low tissue specificity
Detected in all
PTGS1
ENSSSCG00000005533
ENSG00000095303
Prostaglandin-endoperoxide synthase 1
Tissue enhanced
Detected in many
cartilage:
42.8
gallbladder:
36.3
PTH1R
ENSSSCG00000011326
ENSG00000160801
Parathyroid hormone/parathyroid hormone-related peptide receptor
Tissue enhanced
Detected in many
cartilage:
47.4
kidney:
49.9
PTHLH
ENSSSCG00000036893
ENSG00000087494
Parathyroid hormone-related protein precursor
Tissue enhanced
Detected in all
male glands:
30.5
PTPN13
ENSSSCG00000026655
ENSG00000163629
Protein tyrosine phosphatase, non-receptor type 13
Low tissue specificity
Detected in all
PTPN9
ENSSSCG00000001878
ENSG00000169410
Protein tyrosine phosphatase, non-receptor type 9
Low tissue specificity
Detected in all
PTPRU
ENSSSCG00000003590
ENSG00000060656
Protein tyrosine phosphatase, receptor type U
Tissue enriched
Detected in many
lens:
75.6
QRFP
ENSSSCG00000005705
ENSG00000188710
Pyroglutamylated RFamide peptide
Tissue enhanced
Detected in all
cervix:
37.5
RAB13
ENSSSCG00000006564
ENSG00000143545
RAB13, member RAS oncogene family
Low tissue specificity
Detected in all
RAB3IL1
ENSSSCG00000013074
ENSG00000167994
RAB3A interacting protein like 1
Tissue enhanced
Detected in many
testis:
83.0
RARRES2
ENSSSCG00000035419
ENSG00000106538
Retinoic acid receptor responder protein 2 precursor
Tissue enhanced
Detected in all
kidney:
123.4
liver:
125.8
RASL12
ENSSSCG00000038071
ENSG00000103710
RAS like family 12
Tissue enhanced
Detected in many
cervix:
37.1
smooth muscle:
38.1
RCN3
ENSSSCG00000024823
ENSG00000142552
Reticulocalbin 3
Tissue enhanced
Detected in many
cartilage:
90.5
RECK
ENSSSCG00000005338
ENSG00000122707
Reversion inducing cysteine rich protein with kazal motifs
Low tissue specificity
Detected in all
RERG
ENSSSCG00000000602
ENSG00000134533
RAS like estrogen regulated growth inhibitor
Tissue enhanced
Detected in many
adrenal gland:
59.8
cervix:
47.5
RFX2
ENSSSCG00000035403
ENSG00000087903
Regulatory factor X2
Tissue enhanced
Detected in many
skin:
50.4
testis:
56.2
RGS12
ENSSSCG00000008698
ENSG00000159788
Regulator of G protein signaling 12
Low tissue specificity
Detected in all
RIN2
ENSSSCG00000028004
ENSG00000132669
Ras and Rab interactor 2
Low tissue specificity
Detected in all
RNF215
ENSSSCG00000010005
ENSG00000099999
Ring finger protein 215
Low tissue specificity
Detected in all
SAMD4A
ENSSSCG00000023408
ENSG00000020577
Sterile alpha motif domain containing 4A
Tissue enhanced
Detected in many
testis:
79.6
SCARF2
ENSSSCG00000010109
ENSG00000244486
Scavenger receptor class F member 2
Low tissue specificity
Detected in many
SCN7A
ENSSSCG00000015914
ENSG00000136546
Sodium voltage-gated channel alpha subunit 7
Group enriched
Detected in many
ductus deferens:
24.9
vagus nerve:
56.7
SCP2
ENSSSCG00000027114
ENSG00000174348
Non-specific lipid-transfer protein
Tissue enhanced
Detected in all
liver:
102.2
SCUBE1
ENSSSCG00000000029
ENSG00000159307
Signal peptide, CUB domain and EGF like domain containing 1
Tissue enhanced
Detected in many
cervix:
50.6
endometrium:
43.3
SELENOM
ENSSSCG00000029781
ENSG00000198832
Selenoprotein M precursor
Tissue enhanced
Detected in many
ovary:
102.6
SEMA3D
ENSSSCG00000015396
ENSG00000153993
Semaphorin 3D
Group enriched
Detected in many
cartilage:
103.9
thyroid gland:
27.0
SEMA5A
ENSSSCG00000017095
ENSG00000112902
Semaphorin 5A
Tissue enhanced
Detected in many
lens:
89.0
SERPINH1
ENSSSCG00000039468
ENSG00000149257
Serpin H1 precursor
Tissue enhanced
Detected in all
ovary:
137.3
SESTD1
ENSSSCG00000016005
ENSG00000187231
SEC14 and spectrin domain containing 1
Low tissue specificity
Detected in all
SFRP1
ENSSSCG00000025822
ENSG00000104332
Secreted frizzled related protein 1
Tissue enhanced
Detected in many
choroid plexus:
166.0
SFRP4
ENSSSCG00000035299
ENSG00000106483
Secreted frizzled-related protein 4 precursor
Tissue enhanced
Detected in many
dura mater:
134.2
upper respiratory system:
41.4
vagus nerve:
48.3
SFRP5
ENSSSCG00000010529
ENSG00000120057
Secreted frizzled-related protein 5 precursor
Tissue enhanced
Detected in many
adipose tissue:
50.7
choroid plexus:
112.8
vagus nerve:
88.5
SH2D6
ENSSSCG00000008240
ENSG00000152292
SH2 domain containing 6
Tissue enhanced
Detected in many
epididymis:
97.4
vagus nerve:
45.8
SH3PXD2A
ENSSSCG00000010604
ENSG00000107957
SH3 and PX domains 2A
Low tissue specificity
Detected in many
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