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UMAP gene cluster
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Keyword
Chromosome
1
2
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6
7
8
9
10
11
12
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MT
Unmapped
X
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
Cartilage
Heart
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Lymphoid tissue
Male glands
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Mouth
Skin
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Stomach 1
Upper respiratory system
Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
THE PIG ATLAS
TISSUE SPECIFIC PROTEOME
UMAP GENE CLUSTERING
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415 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
SHISA2
ENSSSCG00000030113
ENSG00000180730
Shisa family member 2
Tissue enhanced
Detected in many
cartilage:
90.7
male glands:
23.3
skeletal muscle:
26.0
SHISA3
ENSSSCG00000040147
ENSG00000178343
Shisa family member 3
Tissue enhanced
Detected in many
cartilage:
17.0
vagus nerve:
61.0
SIPA1L2
ENSSSCG00000010169
ENSG00000116991
Signal induced proliferation associated 1 like 2
Low tissue specificity
Detected in many
SLC39A13
ENSSSCG00000013238
ENSG00000165915
Solute carrier family 39 member 13
Low tissue specificity
Detected in all
SLC44A2
ENSSSCG00000013639
ENSG00000129353
Solute carrier family 44 member 2
Low tissue specificity
Detected in all
SLIT3
ENSSSCG00000017012
ENSG00000184347
Slit guidance ligand 3
Tissue enhanced
Detected in many
lens:
68.2
penis:
66.1
SMAD9
ENSSSCG00000009357
ENSG00000120693
Mothers against decapentaplegic homolog 9
Low tissue specificity
Detected in many
SMO
ENSSSCG00000016569
ENSG00000128602
Smoothened, frizzled class receptor
Tissue enhanced
Detected in many
cartilage:
68.4
SNORC
ENSSSCG00000016294
ENSG00000182600
Uncharacterized protein C2orf82 homolog precursor
Tissue enriched
Detected in some
cartilage:
229.6
SPATA20
ENSSSCG00000017565
ENSG00000006282
Spermatogenesis-associated protein 20
Tissue enriched
Detected in many
testis:
59.3
SPSB1
ENSSSCG00000035940
ENSG00000171621
SplA/ryanodine receptor domain and SOCS box containing 1
Tissue enhanced
Detected in many
cartilage:
51.5
SPTBN5
ENSSSCG00000004736
ENSG00000137877
Spectrin beta, non-erythrocytic 5
Group enriched
Detected in many
retina:
30.8
vagus nerve:
25.1
SPTLC3
ENSSSCG00000007072
ENSG00000172296
Serine palmitoyltransferase long chain base subunit 3
Tissue enhanced
Detected in many
skin:
21.9
vagus nerve:
24.0
SSPN
ENSSSCG00000025531
ENSG00000123096
Sarcospan
Tissue enhanced
Detected in many
smooth muscle:
47.9
ST3GAL4
ENSSSCG00000015232
ENSG00000110080
CMP-N-acetylneuraminate-beta-galactosamide-alpha-2, 3-sialyltransferase 4
Tissue enriched
Detected in many
male glands:
175.5
STEAP1
ENSSSCG00000015301
ENSG00000164647
Metalloreductase STEAP1
Tissue enhanced
Detected in many
choroid plexus:
15.9
SULF1
ENSSSCG00000006197
ENSG00000137573
Sulfatase 1
Tissue enhanced
Detected in many
choroid plexus:
72.9
ovary:
48.2
SULF2
ENSSSCG00000007456
ENSG00000196562
Sulfatase 2
Tissue enhanced
Detected in all
cartilage:
77.4
cornea:
58.6
SUSD5
ENSSSCG00000039358
ENSG00000173705
Sushi domain containing 5
Tissue enriched
Detected in many
cartilage:
62.4
SYDE1
ENSSSCG00000013829
ENSG00000105137
Synapse defective Rho GTPase homolog 1
Low tissue specificity
Detected in all
SYDE2
ENSSSCG00000006947
ENSG00000097096
Synapse defective Rho GTPase homolog 2
Low tissue specificity
Detected in all
TCFL5
ENSSSCG00000038631
ENSG00000101190
Transcription factor like 5
Group enriched
Detected in many
cartilage:
90.0
testis:
31.2
TCN2
ENSSSCG00000010011
ENSG00000185339
Transcobalamin-2 precursor
Low tissue specificity
Detected in all
TEAD2
ENSSSCG00000025568
ENSG00000074219
TEA domain transcription factor 2
Low tissue specificity
Detected in all
TGFB3
ENSSSCG00000002385
ENSG00000119699
Transforming growth factor beta-3 precursor
Tissue enhanced
Detected in many
cartilage:
37.8
penis:
51.2
TGFBR3
ENSSSCG00000006911
ENSG00000069702
Transforming growth factor beta receptor type 3 precursor
Low tissue specificity
Detected in all
THBS2
ENSSSCG00000004012
ENSG00000186340
Thrombospondin 2
Tissue enhanced
Detected in many
cornea:
56.1
dura mater:
89.5
THBS3
ENSSSCG00000006524
ENSG00000169231
Thrombospondin 3
Tissue enriched
Detected in many
cartilage:
68.7
THBS4
ENSSSCG00000014117
ENSG00000113296
Thrombospondin 4
Tissue enhanced
Detected in many
bone marrow:
79.3
cornea:
86.9
smooth muscle:
78.7
synovial tissue:
82.6
TIMP1
ENSSSCG00000012277
ENSG00000102265
Metalloproteinase inhibitor 1 precursor
Tissue enriched
Detected in many
ovary:
718.4
TIMP3
ENSSSCG00000031866
ENSG00000100234
TIMP metallopeptidase inhibitor 3
Low tissue specificity
Detected in all
TMEM184B
ENSSSCG00000000108
ENSG00000198792
Transmembrane protein 184B
Low tissue specificity
Detected in all
TMEM245
ENSSSCG00000005444
ENSG00000106771
Transmembrane protein 245
Low tissue specificity
Detected in all
TMEM43
ENSSSCG00000011603
ENSG00000170876
Transmembrane protein 43
Low tissue specificity
Detected in all
TMEM45A
ENSSSCG00000011965
ENSG00000181458
Transmembrane protein 45A
Tissue enhanced
Detected in all
cartilage:
21.6
TNC
ENSSSCG00000005494
ENSG00000041982
Tenascin precursor
Tissue enhanced
Detected in many
cartilage:
169.5
smooth muscle:
64.2
synovial tissue:
56.1
TNFAIP1
ENSSSCG00000024626
ENSG00000109079
TNF alpha induced protein 1
Low tissue specificity
Detected in all
TNFAIP6
ENSSSCG00000023716
ENSG00000123610
Tumor necrosis factor-inducible gene 6 protein precursor
Tissue enhanced
Detected in many
mesothelial tissue:
15.2
synovial tissue:
30.4
TNFRSF12A
ENSSSCG00000027130
ENSG00000006327
TNF receptor superfamily member 12A
Tissue enhanced
Detected in many
lens:
46.6
ovary:
89.9
TPBG
ENSSSCG00000004458
ENSG00000146242
Trophoblast glycoprotein
Tissue enhanced
Detected in many
cornea:
32.7
TPPP3
ENSSSCG00000035983
ENSG00000159713
Tubulin polymerization promoting protein family member 3
Low tissue specificity
Detected in all
TRIM47
ENSSSCG00000017199
ENSG00000132481
Tripartite motif containing 47
Tissue enhanced
Detected in many
cartilage:
72.7
synovial tissue:
40.9
TRIP6
ENSSSCG00000027486
ENSG00000087077
Thyroid hormone receptor interactor 6
Tissue enhanced
Detected in all
lens:
66.7
TSHZ3
ENSSSCG00000025214
ENSG00000121297
Teashirt zinc finger homeobox 3
Low tissue specificity
Detected in many
TSPAN4
ENSSSCG00000012838
ENSG00000214063
Tetraspanin 4
Low tissue specificity
Detected in all
TTC23
ENSSSCG00000004813
ENSG00000103852
Tetratricopeptide repeat domain 23
Tissue enhanced
Detected in all
smooth muscle:
81.2
TTC28
ENSSSCG00000009968
ENSG00000100154
Tetratricopeptide repeat domain 28
Low tissue specificity
Detected in all
TULP3
ENSSSCG00000000737
ENSG00000078246
Tubby like protein 3
Tissue enhanced
Detected in all
lens:
45.9
TWIST1
ENSSSCG00000015370
ENSG00000122691
Twist family bHLH transcription factor 1
Tissue enhanced
Detected in many
adipose tissue:
31.3
dura mater:
47.7
UNC45A
ENSSSCG00000001821
ENSG00000140553
Protein unc-45 homolog A
Low tissue specificity
Detected in all
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