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Human disease related genes
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UMAP gene cluster
Pig tissue group category (RNA)
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Gene name
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Biological process
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Keyword
Chromosome
1
2
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6
7
8
9
10
11
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MT
Unmapped
X
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
Cartilage
Heart
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Lymphoid tissue
Male glands
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Stomach 1
Upper respiratory system
Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
THE PIG ATLAS
TISSUE SPECIFIC PROTEOME
UMAP GENE CLUSTERING
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415 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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1.
Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
na
ENSSSCG00000039346
Group enriched
Detected in some
brain:
3.1
mesothelial tissue:
2.5
vagus nerve:
5.4
na
ENSSSCG00000039355
Tissue enhanced
Detected in many
skeletal muscle:
42.8
na
ENSSSCG00000039364
ENSG00000183098
Tissue enriched
Detected in many
cartilage:
185.3
na
ENSSSCG00000039558
Low tissue specificity
Detected in many
na
ENSSSCG00000039576
Tissue enhanced
Detected in some
cartilage:
3.2
mesothelial tissue:
1.4
skin:
2.0
na
ENSSSCG00000039694
Group enriched
Detected in some
cartilage:
3.1
mesothelial tissue:
1.3
testis:
1.1
na
ENSSSCG00000040222
Tissue enhanced
Detected in many
brain:
83.3
na
ENSSSCG00000040461
ENSG00000129757
Low tissue specificity
Detected in many
na
ENSSSCG00000040614
Tissue enhanced
Detected in some
cornea:
2.5
dura mater:
2.8
na
ENSSSCG00000040895
Tissue enriched
Detected in single
cartilage:
6.9
na
ENSSSCG00000040965
Tissue enhanced
Detected in many
choroid plexus:
9.7
lens:
16.2
NAV1
ENSSSCG00000010915
ENSG00000134369
Neuron navigator 1
Low tissue specificity
Detected in all
NBL1
ENSSSCG00000024669
ENSG00000158747
Neuroblastoma 1, DAN family BMP antagonist
Tissue enhanced
Detected in all
cervix:
154.2
male glands:
140.5
NCKAP5L
ENSSSCG00000000209
ENSG00000167566
NCK associated protein 5 like
Low tissue specificity
Detected in all
NDE1
ENSSSCG00000040479
ENSG00000072864
NudE neurodevelopment protein 1
Low tissue specificity
Detected in all
NDNF
ENSSSCG00000029260
ENSG00000173376
Neuron derived neurotrophic factor
Tissue enhanced
Detected in many
choroid plexus:
43.3
NDUFA4L2
ENSSSCG00000027621
ENSG00000185633
NADH dehydrogenase
Tissue enriched
Detected in many
cartilage:
82.0
NFIA
ENSSSCG00000023243
ENSG00000162599
Nuclear factor I A
Low tissue specificity
Detected in all
NID2
ENSSSCG00000005030
ENSG00000087303
Nidogen 2
Tissue enhanced
Detected in many
lens:
131.6
NINJ1
ENSSSCG00000040061
ENSG00000131669
Ninjurin 1
Low tissue specificity
Detected in all
NKX6-1
ENSSSCG00000009232
ENSG00000163623
NK6 homeobox 1
Tissue enhanced
Detected in some
brain:
11.8
mouth:
7.0
upper respiratory system:
23.9
NOD1
ENSSSCG00000016678
ENSG00000106100
Nucleotide-binding oligomerization domain-containing protein 1
Tissue enhanced
Detected in many
lens:
42.6
NOV
ENSSSCG00000006002
ENSG00000136999
Nephroblastoma overexpressed
Tissue enhanced
Detected in many
dura mater:
78.5
penis:
103.9
NPR2
ENSSSCG00000005322
ENSG00000159899
Atrial natriuretic peptide receptor 2 precursor
Low tissue specificity
Detected in all
NRBP2
ENSSSCG00000038025
ENSG00000185189
Nuclear receptor binding protein 2
Tissue enhanced
Detected in all
skin:
71.1
vagus nerve:
80.9
NRP2
ENSSSCG00000026383
ENSG00000118257
Neuropilin 2
Tissue enhanced
Detected in many
smooth muscle:
71.2
NTN1
ENSSSCG00000017993
ENSG00000065320
Netrin-1 precursor
Tissue enriched
Detected in many
cartilage:
142.9
NTN3
ENSSSCG00000008054
ENSG00000162068
Netrin 3
Tissue enhanced
Detected in many
epididymis:
17.2
NTN4
ENSSSCG00000000896
ENSG00000074527
Netrin 4
Tissue enhanced
Detected in many
cartilage:
59.6
penis:
30.7
NXN
ENSSSCG00000028720
ENSG00000167693
Nucleoredoxin
Tissue enhanced
Detected in all
lens:
89.9
NYNRIN
ENSSSCG00000032473
ENSG00000205978
NYN domain and retroviral integrase containing
Low tissue specificity
Detected in all
OAF
ENSSSCG00000036307
ENSG00000184232
Out at first homolog
Tissue enhanced
Detected in all
liver:
92.1
OMD
ENSSSCG00000008073
ENSG00000127083
Osteomodulin
Tissue enhanced
Detected in all
dura mater:
72.3
P3H3
ENSSSCG00000000681
ENSG00000110811
Prolyl 3-hydroxylase 3
Tissue enhanced
Detected in many
cartilage:
48.2
P3H4
ENSSSCG00000017429
ENSG00000141696
Prolyl 3-hydroxylase family member 4 (non-enzymatic)
Low tissue specificity
Detected in many
P4HA3
ENSSSCG00000014840
ENSG00000149380
Prolyl 4-hydroxylase subunit alpha 3
Tissue enhanced
Detected in many
cartilage:
54.1
dura mater:
25.6
PANX3
ENSSSCG00000015194
ENSG00000154143
Pannexin 3
Tissue enriched
Detected in some
cartilage:
16.8
PAOX
ENSSSCG00000040586
ENSG00000148832
Polyamine oxidase
Tissue enhanced
Detected in many
skin:
40.6
PDGFA
ENSSSCG00000007541
ENSG00000197461
Platelet derived growth factor subunit A
Low tissue specificity
Detected in all
PDGFRA
ENSSSCG00000008841
ENSG00000134853
Platelet-derived growth factor receptor alpha precursor
Tissue enhanced
Detected in all
cartilage:
67.5
ovary:
55.7
PDGFRL
ENSSSCG00000006988
ENSG00000104213
Platelet derived growth factor receptor like
Tissue enhanced
Detected in many
cornea:
98.9
PDLIM4
ENSSSCG00000014274
ENSG00000131435
PDZ and LIM domain protein 4
Low tissue specificity
Detected in all
PELI2
ENSSSCG00000033800
ENSG00000139946
Pellino E3 ubiquitin protein ligase family member 2
Low tissue specificity
Detected in all
PGF
ENSSSCG00000002376
ENSG00000119630
Placental growth factor
Tissue enhanced
Detected in many
male glands:
50.9
PHF13
ENSSSCG00000027869
ENSG00000116273
PHD finger protein 13
Low tissue specificity
Detected in all
PHLDA1
ENSSSCG00000000521
ENSG00000139289
Pleckstrin homology like domain family A member 1
Tissue enhanced
Detected in all
cartilage:
197.4
salivary gland:
118.9
PHLDA3
ENSSSCG00000029359
ENSG00000174307
Pleckstrin homology like domain family A member 3
Low tissue specificity
Detected in many
PHLDB1
ENSSSCG00000024578
ENSG00000019144
Pleckstrin homology like domain family B member 1
Tissue enhanced
Detected in all
cartilage:
87.1
PIAS3
ENSSSCG00000006689
ENSG00000131788
Protein inhibitor of activated STAT 3
Low tissue specificity
Detected in all
PKD1
ENSSSCG00000008041
ENSG00000008710
Polycystin-1 precursor
Tissue enhanced
Detected in all
cartilage:
58.6
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