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Human disease related genes
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UMAP gene cluster
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Keyword
Chromosome
1
2
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6
7
8
9
10
11
12
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MT
Unmapped
X
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
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Heart
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Lymphoid tissue
Male glands
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Mouth
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Stomach 1
Upper respiratory system
Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
THE PIG ATLAS
TISSUE SPECIFIC PROTEOME
UMAP GENE CLUSTERING
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415 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
ECM2
ENSSSCG00000028549
ENSG00000106823
Extracellular matrix protein 2
Low tissue specificity
Detected in many
EDA
ENSSSCG00000021647
ENSG00000158813
Ectodysplasin A
Low tissue specificity
Detected in many
EEF2K
ENSSSCG00000007839
ENSG00000103319
Eukaryotic elongation factor 2 kinase
Low tissue specificity
Detected in all
EFEMP1
ENSSSCG00000008397
ENSG00000115380
EGF-containing fibulin-like extracellular matrix protein 1 precursor
Tissue enhanced
Detected in all
cornea:
98.9
EFEMP2
ENSSSCG00000012971
ENSG00000172638
EGF containing fibulin extracellular matrix protein 2
Low tissue specificity
Detected in all
EFS
ENSSSCG00000002026
ENSG00000100842
Embryonal Fyn-associated substrate
Low tissue specificity
Detected in many
EGFL8
ENSSSCG00000001434
ENSG00000241404
Epidermal growth factor-like protein 8
Tissue enhanced
Detected in all
stomach:
44.4
vagus nerve:
78.8
EMILIN3
ENSSSCG00000007358
ENSG00000183798
Elastin microfibril interfacer 3
Tissue enhanced
Detected in many
cartilage:
29.3
vagus nerve:
18.0
EVC
ENSSSCG00000032637
ENSG00000072840
EvC ciliary complex subunit 1
Tissue enhanced
Detected in all
kidney:
55.2
EVC2
ENSSSCG00000024399
ENSG00000173040
EvC ciliary complex subunit 2
Tissue enhanced
Detected in all
kidney:
32.2
F2RL3
ENSSSCG00000013868
ENSG00000127533
F2R like thrombin or trypsin receptor 3
Tissue enhanced
Detected in some
cartilage:
5.9
cervix:
3.2
lymphoid tissue:
5.2
FADS3
ENSSSCG00000013073
ENSG00000221968
Fatty acid desaturase 3
Tissue enhanced
Detected in many
lymphoid tissue:
79.8
FAM178B
ENSSSCG00000008196
ENSG00000168754
Family with sequence similarity 178 member B
Tissue enhanced
Detected in many
testis:
20.6
vagus nerve:
11.5
FAM180A
ENSSSCG00000036403
ENSG00000189320
Family with sequence similarity 180 member A
Tissue enhanced
Detected in many
cartilage:
24.4
dura mater:
28.3
FAM180B
ENSSSCG00000013230
ENSG00000196666
Family with sequence similarity 180 member B
Tissue enhanced
Detected in some
aorta:
7.2
dura mater:
24.6
vagus nerve:
15.5
FAM189B
ENSSSCG00000006521
ENSG00000160767
Family with sequence similarity 189 member B
Low tissue specificity
Detected in all
FAM198A
ENSSSCG00000011294
ENSG00000144649
Family with sequence similarity 198 member A
Tissue enhanced
Detected in many
dura mater:
40.3
FAM89B
ENSSSCG00000035604
ENSG00000176973
Family with sequence similarity 89 member B
Tissue enhanced
Detected in many
cartilage:
22.3
FAT4
ENSSSCG00000036155
ENSG00000196159
FAT atypical cadherin 4
Low tissue specificity
Detected in many
FBLN2
ENSSSCG00000011609
ENSG00000163520
Fibulin 2
Tissue enhanced
Detected in all
mesothelial tissue:
88.7
FBLN7
ENSSSCG00000008101
ENSG00000144152
Fibulin 7
Tissue enriched
Detected in many
cartilage:
150.7
FBN2
ENSSSCG00000014256
ENSG00000138829
Fibrillin 2
Tissue enhanced
Detected in many
cartilage:
18.2
ductus deferens:
24.9
pituitary gland:
20.0
FBXL7
ENSSSCG00000028239
ENSG00000183580
F-box and leucine rich repeat protein 7
Low tissue specificity
Detected in many
FBXO32
ENSSSCG00000005981
ENSG00000156804
F-box only protein 32
Tissue enhanced
Detected in many
cervix:
98.9
smooth muscle:
110.1
FGF4
ENSSSCG00000012870
ENSG00000075388
Fibroblast growth factor 4
Tissue enhanced
Detected in some
brain:
2.4
mesothelial tissue:
6.0
vagus nerve:
4.7
FGFR1
ENSSSCG00000015815
ENSG00000077782
Fibroblast growth factor receptor 1
Tissue enhanced
Detected in all
cartilage:
88.1
FKBP10
ENSSSCG00000017422
ENSG00000141756
Peptidyl-prolyl cis-trans isomerase FKBP10 precursor
Tissue enhanced
Detected in many
cartilage:
54.7
FMOD
ENSSSCG00000015270
ENSG00000122176
Fibromodulin
Tissue enriched
Detected in many
cartilage:
254.1
FOXC1
ENSSSCG00000039756
ENSG00000054598
Forkhead box C1
Tissue enhanced
Detected in many
cartilage:
121.3
salivary gland:
38.6
FOXC2
ENSSSCG00000029296
ENSG00000176692
Forkhead box C2
Tissue enhanced
Detected in many
cartilage:
61.3
penis:
46.1
vagus nerve:
63.1
FOXD1
ENSSSCG00000035878
ENSG00000251493
Forkhead box D1
Tissue enhanced
Detected in many
brain:
14.0
dura mater:
27.7
vagus nerve:
29.4
FOXD3
ENSSSCG00000032215
ENSG00000187140
Forkhead box D3
Tissue enhanced
Detected in many
brain:
10.9
vagus nerve:
36.0
FSTL1
ENSSSCG00000039426
ENSG00000163430
Follistatin like 1
Tissue enhanced
Detected in all
mesothelial tissue:
125.1
FSTL3
ENSSSCG00000037102
ENSG00000070404
Follistatin like 3
Tissue enhanced
Detected in many
ovary:
73.2
FZD1
ENSSSCG00000036436
ENSG00000157240
Frizzled class receptor 1
Low tissue specificity
Detected in many
FZD7
ENSSSCG00000016111
ENSG00000155760
Frizzled class receptor 7
Tissue enhanced
Detected in all
choroid plexus:
52.3
FZD8
ENSSSCG00000033001
ENSG00000177283
Frizzled class receptor 8
Tissue enhanced
Detected in many
cartilage:
88.3
GAL3ST4
ENSSSCG00000007648
ENSG00000197093
Galactose-3-O-sulfotransferase 4
Low tissue specificity
Detected in all
GAS6
ENSSSCG00000009565
ENSG00000183087
Growth arrest-specific protein 6 precursor
Low tissue specificity
Detected in many
GDF5
ENSSSCG00000023261
ENSG00000125965
Growth/differentiation factor 5 precursor
Tissue enriched
Detected in some
cartilage:
61.3
GDF5OS
ENSSSCG00000037881
ENSG00000204183
Growth differentiation factor 5 opposite strand
Group enriched
Detected in some
cartilage:
6.0
testis:
1.9
GDF6
ENSSSCG00000034943
ENSG00000156466
Growth differentiation factor 6
Tissue enhanced
Detected in some
aorta:
5.5
cartilage:
22.8
gallbladder:
7.8
GFRA1
ENSSSCG00000010655
ENSG00000151892
GDNF family receptor alpha 1
Low tissue specificity
Detected in many
GFRA3
ENSSSCG00000014328
ENSG00000146013
GDNF family receptor alpha 3
Tissue enhanced
Detected in many
adipose tissue:
31.5
brain:
27.3
small intestine:
32.3
vagus nerve:
24.9
GJC3
ENSSSCG00000007636
ENSG00000176402
Gap junction protein gamma 3
Tissue enriched
Detected in many
vagus nerve:
83.7
GLI1
ENSSSCG00000000443
ENSG00000111087
Zinc finger protein GLI1
Tissue enhanced
Detected in many
cartilage:
19.5
vagus nerve:
16.9
GLI3
ENSSSCG00000016763
ENSG00000106571
GLI family zinc finger 3
Tissue enhanced
Detected in many
cartilage:
79.1
GLIS1
ENSSSCG00000003846
ENSG00000174332
GLIS family zinc finger 1
Tissue enhanced
Detected in many
cartilage:
36.5
ductus deferens:
36.4
kidney:
25.7
GLIS2
ENSSSCG00000023653
ENSG00000126603
GLIS family zinc finger 2
Low tissue specificity
Detected in all
GLT8D2
ENSSSCG00000000848
ENSG00000120820
Glycosyltransferase 8 domain containing 2
Tissue enhanced
Detected in many
cartilage:
32.1
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