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Gene name
Human disease related genes
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Within tissue variation
UMAP gene cluster
Pig tissue group category (RNA)
Pig brain category (RNA)
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Gene name
Class
Cancers
Cardiovascular diseases
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Digestive system diseases
Endocrine and metabolic diseases
Immune system diseases
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Other congenital disorders
Other diseases
Reproductive system diseases
Respiratory diseases
Skin diseases
Urinary system diseases
Subclass
Class
Biological process
Molecular function
Disease
Keyword
Chromosome
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
MT
Unmapped
X
Y
External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
Cartilage
Heart
Kidney
Large intestine
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Skin
Small intestine
Stomach 1
Upper respiratory system
Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
THE PIG ATLAS
TISSUE SPECIFIC PROTEOME
UMAP GENE CLUSTERING
BIOMEDICAL RESEARCH
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270 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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1.
Select data columns:
Gene
Expand
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
2.
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
na
ENSSSCG00000010242
Tissue enhanced
Detected in many
lymphoid tissue:
13.6
na
ENSSSCG00000015215
Tissue enhanced
Detected in many
lymphoid tissue:
15.3
na
ENSSSCG00000017032
ENSG00000164611,ENSG00000250254
Tissue enhanced
Detected in many
testis:
49.4
na
ENSSSCG00000020888
Tissue enhanced
Detected in some
large intestine:
4.3
lymphoid tissue:
11.7
na
ENSSSCG00000021310
ENSG00000183814
Low tissue specificity
Detected in all
na
ENSSSCG00000024568
Tissue enhanced
Detected in some
dura mater:
29.3
lymphoid tissue:
8.5
testis:
10.1
na
ENSSSCG00000026302
ENSG00000148773
Tissue enhanced
Detected in many
large intestine:
28.0
lymphoid tissue:
56.6
small intestine:
28.1
stomach:
41.4
na
ENSSSCG00000028981
ENSG00000165244
Tissue enhanced
Detected in many
lymphoid tissue:
19.1
na
ENSSSCG00000029393
ENSG00000151849
Tissue enriched
Detected in all
testis:
48.4
na
ENSSSCG00000030469
ENSG00000169679
Tissue enhanced
Detected in many
lymphoid tissue:
16.1
testis:
35.3
na
ENSSSCG00000031526
Tissue enhanced
Detected in all
lymphoid tissue:
47.9
upper respiratory system:
30.9
na
ENSSSCG00000031741
Tissue enhanced
Detected in many
lymphoid tissue:
32.0
upper respiratory system:
19.4
na
ENSSSCG00000032242
High mobility group protein HMG-I/HMG-Y isoform 2
Tissue enhanced
Detected in all
stomach:
155.2
na
ENSSSCG00000032319
Tissue enhanced
Detected in all
testis:
36.0
na
ENSSSCG00000032496
Tissue enhanced
Detected in many
lymphoid tissue:
205.9
upper respiratory system:
78.6
na
ENSSSCG00000032769
Tissue enhanced
Detected in all
lymphoid tissue:
189.5
na
ENSSSCG00000033065
ENSG00000276180
Histone H4
Tissue enhanced
Detected in all
lymphoid tissue:
68.9
upper respiratory system:
69.4
na
ENSSSCG00000033252
Tissue enhanced
Detected in some
lymphoid tissue:
8.7
na
ENSSSCG00000033451
Tissue enhanced
Detected in many
lymphoid tissue:
49.3
upper respiratory system:
32.0
na
ENSSSCG00000033550
Tissue enhanced
Detected in many
lymphoid tissue:
84.2
upper respiratory system:
64.3
na
ENSSSCG00000033736
Tissue enhanced
Detected in all
male glands:
216.6
na
ENSSSCG00000033950
Tissue enhanced
Detected in many
large intestine:
17.8
lymphoid tissue:
53.1
upper respiratory system:
26.3
na
ENSSSCG00000034074
Low tissue specificity
Detected in many
na
ENSSSCG00000034136
ENSG00000277157
Histone H4
Tissue enhanced
Detected in all
lymphoid tissue:
127.2
upper respiratory system:
99.5
na
ENSSSCG00000034595
Tissue enhanced
Detected in all
lymphoid tissue:
225.2
upper respiratory system:
75.4
na
ENSSSCG00000034688
ENSG00000278705
Histone H4
Tissue enhanced
Detected in many
lymphoid tissue:
48.8
upper respiratory system:
27.8
na
ENSSSCG00000034986
Tissue enhanced
Detected in many
large intestine:
45.4
lymphoid tissue:
97.4
upper respiratory system:
55.3
na
ENSSSCG00000035261
ENSG00000203811
Sus scrofa histone cluster 2, H3-like (LOC100156741), mRNA.
Tissue enhanced
Detected in all
lymphoid tissue:
197.2
upper respiratory system:
127.6
na
ENSSSCG00000035473
ENSG00000275126
Histone H4
Tissue enhanced
Detected in all
lymphoid tissue:
37.3
na
ENSSSCG00000035610
ENSG00000278588
Tissue enhanced
Detected in many
large intestine:
47.2
lymphoid tissue:
101.1
upper respiratory system:
59.5
na
ENSSSCG00000035644
ENSG00000274267
Tissue enhanced
Detected in many
lymphoid tissue:
209.1
upper respiratory system:
160.2
na
ENSSSCG00000035955
ENSG00000180596
Tissue enhanced
Detected in all
lymphoid tissue:
52.3
na
ENSSSCG00000036048
ENSG00000196747
Tissue enhanced
Detected in many
lymphoid tissue:
77.5
upper respiratory system:
50.5
na
ENSSSCG00000036080
ENSG00000277075
Tissue enhanced
Detected in many
lymphoid tissue:
130.8
upper respiratory system:
71.7
na
ENSSSCG00000036181
ENSG00000275713
Tissue enhanced
Detected in many
large intestine:
29.7
lymphoid tissue:
63.2
upper respiratory system:
30.5
na
ENSSSCG00000036469
Tissue enhanced
Detected in many
lymphoid tissue:
44.2
upper respiratory system:
28.6
na
ENSSSCG00000036562
ENSG00000168148
Tissue enhanced
Detected in all
lymphoid tissue:
92.2
upper respiratory system:
53.3
na
ENSSSCG00000036727
Tissue enhanced
Detected in many
lymphoid tissue:
69.5
upper respiratory system:
53.7
na
ENSSSCG00000037238
ENSG00000161692
Tissue enhanced
Detected in many
lymphoid tissue:
16.8
testis:
15.6
na
ENSSSCG00000037307
ENSG00000198901
Low tissue specificity
Detected in all
na
ENSSSCG00000037929
ENSG00000124635
Tissue enhanced
Detected in many
lymphoid tissue:
59.9
upper respiratory system:
34.1
na
ENSSSCG00000039107
Tissue enhanced
Detected in many
lymphoid tissue:
26.4
testis:
25.8
na
ENSSSCG00000039370
ENSG00000188610,ENSG00000196550,ENSG00000215784,ENSG00000263513
Tissue enhanced
Detected in many
lymphoid tissue:
14.8
upper respiratory system:
10.0
na
ENSSSCG00000039526
ENSG00000196890
Tissue enhanced
Detected in many
lymphoid tissue:
37.7
upper respiratory system:
18.6
na
ENSSSCG00000039615
ENSG00000203812,ENSG00000272196
Tissue enhanced
Detected in all
lymphoid tissue:
189.5
na
ENSSSCG00000040810
Tissue enhanced
Detected in some
lymphoid tissue:
12.5
skin:
8.9
small intestine:
7.7
stomach:
7.8
NCAPD3
ENSSSCG00000022192
ENSG00000151503
Non-SMC condensin II complex subunit D3
Low tissue specificity
Detected in all
NCAPG2
ENSSSCG00000028169
ENSG00000146918
Non-SMC condensin II complex subunit G2
Tissue enhanced
Detected in all
lymphoid tissue:
27.4
testis:
16.8
NEIL3
ENSSSCG00000015771
ENSG00000109674
Nei like DNA glycosylase 3
Tissue enhanced
Detected in many
adrenal gland:
13.5
lymphoid tissue:
13.5
NEK2
ENSSSCG00000015604
ENSG00000117650
NIMA related kinase 2
Tissue enriched
Detected in many
testis:
54.1
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