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Human disease related genes
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UMAP gene cluster
Pig tissue group category (RNA)
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Keyword
Chromosome
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
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18
MT
Unmapped
X
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
Cartilage
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Lymphoid tissue
Male glands
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Mouth
Skin
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Stomach 1
Upper respiratory system
Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
THE PIG ATLAS
TISSUE SPECIFIC PROTEOME
UMAP GENE CLUSTERING
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270 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
HPGDS
ENSSSCG00000009194
ENSG00000163106
Hematopoietic prostaglandin D synthase
Tissue enhanced
Detected in many
lymphoid tissue:
17.0
skin:
15.4
HYLS1
ENSSSCG00000024913
ENSG00000198331
HYLS1, centriolar and ciliogenesis associated
Tissue enhanced
Detected in all
testis:
46.5
IL22
ENSSSCG00000000482
ENSG00000127318
Interleukin 22
Tissue enhanced
Detected in some
large intestine:
2.6
lymphoid tissue:
9.0
small intestine:
1.9
INCENP
ENSSSCG00000013066
ENSG00000149503
Inner centromere protein
Low tissue specificity
Detected in all
IQGAP3
ENSSSCG00000006475
ENSG00000183856
IQ motif containing GTPase activating protein 3
Tissue enhanced
Detected in many
epididymis:
16.8
JAK2
ENSSSCG00000005215
ENSG00000096968
Tyrosine-protein kinase JAK2
Low tissue specificity
Detected in all
KIF11
ENSSSCG00000010471
ENSG00000138160
Kinesin family member 11
Tissue enhanced
Detected in many
lymphoid tissue:
33.9
KIF14
ENSSSCG00000010912
ENSG00000118193
Kinesin family member 14
Tissue enhanced
Detected in many
lymphoid tissue:
17.3
testis:
19.9
KIF15
ENSSSCG00000011309
ENSG00000163808
Kinesin family member 15
Group enriched
Detected in all
lymphoid tissue:
17.1
testis:
66.4
KIF18A
ENSSSCG00000013332
ENSG00000121621
Kinesin family member 18A
Tissue enhanced
Detected in many
lymphoid tissue:
20.2
testis:
14.2
KIF18B
ENSSSCG00000017342
ENSG00000186185
Kinesin family member 18B
Tissue enhanced
Detected in many
lymphoid tissue:
26.5
stomach:
13.5
KIF20A
ENSSSCG00000014326
ENSG00000112984
Kinesin family member 20A
Tissue enhanced
Detected in many
lymphoid tissue:
19.4
KIF20B
ENSSSCG00000010457
ENSG00000138182
Kinesin family member 20B
Tissue enhanced
Detected in all
lymphoid tissue:
20.8
testis:
25.1
KIF22
ENSSSCG00000029509
ENSG00000079616
Kinesin-like protein KIF22
Tissue enhanced
Detected in all
lymphoid tissue:
26.9
KIF23
ENSSSCG00000004969
ENSG00000137807
Kinesin family member 23
Tissue enhanced
Detected in all
fallopian tube:
28.6
KIF24
ENSSSCG00000010984
ENSG00000186638
Kinesin family member 24
Tissue enhanced
Detected in many
upper respiratory system:
13.8
KIF2C
ENSSSCG00000003931
ENSG00000142945
Kinesin family member 2C
Tissue enriched
Detected in many
testis:
45.6
KLK7
ENSSSCG00000032902
ENSG00000169035
Kallikrein-7 precursor
Group enriched
Detected in some
lymphoid tissue:
12.1
skin:
26.6
KNSTRN
ENSSSCG00000004775
ENSG00000128944
Kinetochore localized astrin/SPAG5 binding protein
Tissue enhanced
Detected in all
testis:
48.9
KNTC1
ENSSSCG00000039546
ENSG00000184445
Kinetochore associated 1
Low tissue specificity
Detected in all
KPNA2
ENSSSCG00000029005
ENSG00000182481
Importin subunit alpha-1
Tissue enriched
Detected in many
testis:
108.3
LBR
ENSSSCG00000032397
ENSG00000143815
Lamin B receptor
Tissue enhanced
Detected in all
lymphoid tissue:
40.7
LMNB1
ENSSSCG00000014248
ENSG00000113368
Lamin B1
Tissue enhanced
Detected in all
lymphoid tissue:
52.3
LMNB2
ENSSSCG00000026784
ENSG00000176619
Lamin B2
Low tissue specificity
Detected in all
LYAR
ENSSSCG00000008729
ENSG00000145220
Ly1 antibody reactive
Tissue enriched
Detected in all
testis:
65.7
MANSC4
ENSSSCG00000000546
ENSG00000205693
MANSC domain containing 4
Low tissue specificity
Detected in all
MBD2
ENSSSCG00000004528
ENSG00000134046
Methyl-CpG binding domain protein 2
Low tissue specificity
Detected in all
MCM10
ENSSSCG00000035059
ENSG00000065328
Minichromosome maintenance 10 replication initiation factor
Tissue enhanced
Detected in many
lymphoid tissue:
17.4
MCM2
ENSSSCG00000011624
ENSG00000073111
Minichromosome maintenance complex component 2
Tissue enhanced
Detected in many
lymphoid tissue:
18.5
upper respiratory system:
17.7
MCM3
ENSSSCG00000025488
ENSG00000112118
Minichromosome maintenance complex component 3
Tissue enhanced
Detected in all
lymphoid tissue:
30.7
MCM4
ENSSSCG00000006273
ENSG00000104738
Minichromosome maintenance complex component 4
Low tissue specificity
Detected in all
MCM5
ENSSSCG00000022823
ENSG00000100297
Minichromosome maintenance complex component 5
Tissue enhanced
Detected in many
lymphoid tissue:
32.5
upper respiratory system:
31.1
MCM7
ENSSSCG00000032180
ENSG00000166508
Minichromosome maintenance complex component 7
Low tissue specificity
Detected in all
MIS18A
ENSSSCG00000034229
ENSG00000159055
MIS18 kinetochore protein A
Tissue enhanced
Detected in many
lymphoid tissue:
7.9
testis:
19.2
MMS22L
ENSSSCG00000004344
ENSG00000146263
MMS22 like, DNA repair protein
Tissue enhanced
Detected in many
lymphoid tissue:
16.1
MND1
ENSSSCG00000009009
ENSG00000121211
Meiotic nuclear divisions 1
Tissue enhanced
Detected in many
lymphoid tissue:
17.8
MTAP
ENSSSCG00000005135
ENSG00000099810
Methylthioadenosine phosphorylase
Low tissue specificity
Detected in all
MTBP
ENSSSCG00000005995
ENSG00000172167
MDM2 binding protein
Tissue enhanced
Detected in many
lymphoid tissue:
14.9
MYBL1
ENSSSCG00000027872
ENSG00000185697
MYB proto-oncogene like 1
Tissue enhanced
Detected in many
lymphoid tissue:
44.4
penis:
18.7
MYBL2
ENSSSCG00000007366
ENSG00000101057
Myb-related protein B
Tissue enhanced
Detected in many
lymphoid tissue:
50.3
stomach:
31.0
upper respiratory system:
36.3
na
ENSSSCG00000000217
ENSG00000161800
Low tissue specificity
Detected in many
na
ENSSSCG00000000887
Low tissue specificity
Detected in all
na
ENSSSCG00000001950
ENSG00000100890
Low tissue specificity
Detected in all
na
ENSSSCG00000002849
ENSG00000171241
Tissue enhanced
Detected in many
lymphoid tissue:
22.4
testis:
14.9
upper respiratory system:
12.9
na
ENSSSCG00000003485
Low tissue specificity
Detected in all
na
ENSSSCG00000004766
ENSG00000051180,ENSG00000285396
DNA repair protein RAD51 homolog 1
Low tissue specificity
Detected in all
na
ENSSSCG00000004806
ENSG00000198826
Tissue enhanced
Detected in many
lymphoid tissue:
18.0
na
ENSSSCG00000007493
ENSG00000087586
Aurora kinase A
Tissue enhanced
Detected in many
testis:
42.9
na
ENSSSCG00000009838
Tissue enhanced
Detected in some
lymphoid tissue:
6.0
mouth:
2.9
na
ENSSSCG00000010214
ENSG00000170312
Cyclin-dependent kinase 1
Tissue enhanced
Detected in all
lymphoid tissue:
31.8
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