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Keyword
Chromosome
1
2
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5
6
7
8
9
10
11
12
13
14
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MT
Unmapped
X
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
Cartilage
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Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Skin
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Stomach 1
Upper respiratory system
Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
THE PIG ATLAS
TISSUE SPECIFIC PROTEOME
UMAP GENE CLUSTERING
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270 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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1.
Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
NEMP1
ENSSSCG00000025542
ENSG00000166881
Nuclear envelope integral membrane protein 1
Low tissue specificity
Detected in all
NPM3
ENSSSCG00000010568
ENSG00000107833
Nucleophosmin/nucleoplasmin 3
Low tissue specificity
Detected in all
NUF2
ENSSSCG00000006333
ENSG00000143228
NUF2, NDC80 kinetochore complex component
Tissue enhanced
Detected in many
lymphoid tissue:
22.2
NUP43
ENSSSCG00000004105
ENSG00000120253
Nucleoporin 43
Low tissue specificity
Detected in all
ORC1
ENSSSCG00000003861
ENSG00000085840
Origin recognition complex subunit 1
Tissue enhanced
Detected in many
lymphoid tissue:
18.0
testis:
41.2
ORC6
ENSSSCG00000024443
ENSG00000091651
Origin recognition complex subunit 6
Low tissue specificity
Detected in all
PABPC1L
ENSSSCG00000007382
ENSG00000101104
Poly(A) binding protein cytoplasmic 1 like
Low tissue specificity
Detected in many
PADI6
ENSSSCG00000003484
ENSG00000276747
Peptidyl arginine deiminase 6
Tissue enhanced
Detected in some
mesothelial tissue:
7.3
ovary:
4.2
PARPBP
ENSSSCG00000000859
ENSG00000185480
PARP1 binding protein
Tissue enhanced
Detected in many
lymphoid tissue:
15.1
testis:
11.2
PASK
ENSSSCG00000016378
ENSG00000115687
PAS domain containing serine/threonine kinase
Tissue enhanced
Detected in many
testis:
32.8
PCLAF
ENSSSCG00000004554
ENSG00000166803
PCNA-associated factor
Tissue enhanced
Detected in many
lymphoid tissue:
41.0
PCNA
ENSSSCG00000030642
ENSG00000132646
Proliferating cell nuclear antigen
Tissue enhanced
Detected in all
lymphoid tissue:
46.8
PIF1
ENSSSCG00000004548
ENSG00000140451
PIF1 5'-to-3' DNA helicase
Tissue enhanced
Detected in many
lymphoid tissue:
12.3
PKMYT1
ENSSSCG00000029264
ENSG00000127564
Membrane-associated tyrosine- and threonine-specific cdc2-inhibitory kinase
Tissue enriched
Detected in all
testis:
41.6
PLA2G2F
ENSSSCG00000036504
ENSG00000158786
Group IIF secretory phospholipase A2
Tissue enhanced
Detected in some
large intestine:
6.4
lymphoid tissue:
8.4
retina:
8.3
skin:
27.8
PLEKHF2
ENSSSCG00000039549
ENSG00000175895
Pleckstrin homology and FYVE domain containing 2
Tissue enhanced
Detected in all
retina:
33.4
PLK1
ENSSSCG00000026748
ENSG00000166851
Polo like kinase 1
Tissue enhanced
Detected in many
stomach:
42.9
testis:
73.2
POC1A
ENSSSCG00000011426
ENSG00000164087
POC1 centriolar protein A
Tissue enhanced
Detected in many
testis:
28.5
POLA1
ENSSSCG00000022240
ENSG00000101868
DNA polymerase alpha 1, catalytic subunit
Low tissue specificity
Detected in all
POLE
ENSSSCG00000033051
ENSG00000177084
DNA polymerase epsilon, catalytic subunit
Tissue enhanced
Detected in many
lymphoid tissue:
17.5
POLE2
ENSSSCG00000005008
ENSG00000100479
DNA polymerase epsilon 2, accessory subunit
Tissue enhanced
Detected in many
lymphoid tissue:
19.8
POLQ
ENSSSCG00000036613
ENSG00000051341
DNA polymerase theta
Tissue enhanced
Detected in many
lymphoid tissue:
13.6
testis:
9.4
PRIM2
ENSSSCG00000001493
ENSG00000146143
DNA primase large subunit
Tissue enhanced
Detected in all
kidney:
30.9
PRR11
ENSSSCG00000024145
ENSG00000068489
Proline rich 11
Tissue enhanced
Detected in all
lymphoid tissue:
30.7
PSMC3IP
ENSSSCG00000017396
ENSG00000131470
PSMC3 interacting protein
Tissue enhanced
Detected in many
lymphoid tissue:
14.7
testis:
19.3
RALGPS2
ENSSSCG00000015523
ENSG00000116191
Ral GEF with PH domain and SH3 binding motif 2
Low tissue specificity
Detected in all
RBL1
ENSSSCG00000007331
ENSG00000080839
RB transcriptional corepressor like 1
Low tissue specificity
Detected in all
RCC1
ENSSSCG00000029097
ENSG00000180198
Regulator of chromosome condensation 1
Tissue enhanced
Detected in all
testis:
55.4
RECQL4
ENSSSCG00000025736
ENSG00000160957
RecQ like helicase 4
Low tissue specificity
Detected in all
REXO5
ENSSSCG00000007855
ENSG00000005189
RNA exonuclease 5
Tissue enriched
Detected in all
testis:
117.1
RFC4
ENSSSCG00000011804
ENSG00000163918
Replication factor C subunit 4
Tissue enhanced
Detected in all
testis:
44.1
RFC5
ENSSSCG00000009854
ENSG00000111445
Replication factor C subunit 5
Low tissue specificity
Detected in all
RMI2
ENSSSCG00000022149
ENSG00000175643
RecQ mediated genome instability 2
Tissue enhanced
Detected in many
large intestine:
14.3
lymphoid tissue:
19.7
RRM1
ENSSSCG00000014791
ENSG00000167325
Ribonucleotide reductase catalytic subunit M1
Low tissue specificity
Detected in all
SFR1
ENSSSCG00000010608
ENSG00000156384
SWI5 dependent homologous recombination repair protein 1
Tissue enhanced
Detected in many
testis:
20.4
SGO1
ENSSSCG00000011207
ENSG00000129810
Shugoshin 1
Tissue enhanced
Detected in many
lymphoid tissue:
23.9
SLC35F2
ENSSSCG00000015001
ENSG00000110660
Solute carrier family 35 member F2
Low tissue specificity
Detected in all
SLC4A7
ENSSSCG00000011218
ENSG00000033867
Solute carrier family 4 member 7
Low tissue specificity
Detected in all
SMC2
ENSSSCG00000005403
ENSG00000136824
Structural maintenance of chromosomes 2
Tissue enhanced
Detected in all
lymphoid tissue:
44.7
SMC4
ENSSSCG00000011731
ENSG00000113810
Structural maintenance of chromosomes 4
Tissue enhanced
Detected in all
lymphoid tissue:
62.8
SMC6
ENSSSCG00000008614
ENSG00000163029
Structural maintenance of chromosomes 6
Tissue enhanced
Detected in all
epididymis:
57.1
lymphoid tissue:
61.4
SPAG5
ENSSSCG00000017758
ENSG00000076382
Sperm-associated antigen 5
Tissue enriched
Detected in some
testis:
36.9
SPC24
ENSSSCG00000033444
ENSG00000161888
SPC24, NDC80 kinetochore complex component
Tissue enhanced
Detected in many
dura mater:
16.8
lymphoid tissue:
17.2
testis:
17.4
SPC25
ENSSSCG00000015924
ENSG00000152253
SPC25, NDC80 kinetochore complex component
Low tissue specificity
Detected in all
SPDL1
ENSSSCG00000025965
ENSG00000040275
Spindle apparatus coiled-coil protein 1
Tissue enhanced
Detected in many
testis:
15.5
SPTLC2
ENSSSCG00000002404
ENSG00000100596
Serine palmitoyltransferase long chain base subunit 2
Low tissue specificity
Detected in all
SRPK1
ENSSSCG00000001554
ENSG00000096063
SRSF protein kinase 1
Low tissue specificity
Detected in all
STIL
ENSSSCG00000003888
ENSG00000123473
STIL, centriolar assembly protein
Low tissue specificity
Detected in all
SUV39H1
ENSSSCG00000032453
ENSG00000101945
Suppressor of variegation 3-9 homolog 1
Low tissue specificity
Detected in all
TACC3
ENSSSCG00000008677
ENSG00000013810
Transforming acidic coiled-coil containing protein 3
Tissue enhanced
Detected in all
lymphoid tissue:
28.4
stomach:
29.7
testis:
35.4
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