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UMAP gene cluster
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Keyword
Chromosome
1
2
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6
7
8
9
10
11
12
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14
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MT
Unmapped
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
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Lymphoid tissue
Male glands
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Mouth
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Stomach 1
Upper respiratory system
Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
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TISSUE SPECIFIC PROTEOME
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270 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
CKAP2L
ENSSSCG00000008089
ENSG00000169607
Cytoskeleton associated protein 2 like
Tissue enhanced
Detected in many
large intestine:
16.8
lymphoid tissue:
16.2
small intestine:
19.1
stomach:
37.0
CNOT9
ENSSSCG00000016193
ENSG00000144580
CCR4-NOT transcription complex subunit 9
Low tissue specificity
Detected in all
CYB561A3
ENSSSCG00000013086
ENSG00000162144
Cytochrome b561 family member A3
Low tissue specificity
Detected in all
DCK
ENSSSCG00000008942
ENSG00000156136
Deoxycytidine kinase
Tissue enriched
Detected in all
lymphoid tissue:
117.9
DCLRE1B
ENSSSCG00000006761
ENSG00000118655
DNA cross-link repair 1B
Low tissue specificity
Detected in all
DDIAS
ENSSSCG00000014898
ENSG00000165490
DNA damage induced apoptosis suppressor
Low tissue specificity
Detected in all
DDX39A
ENSSSCG00000013776
ENSG00000123136
DExD-box helicase 39A
Tissue enhanced
Detected in all
testis:
47.1
DEPDC1
ENSSSCG00000033443
ENSG00000024526
DEP domain containing 1
Tissue enhanced
Detected in many
lymphoid tissue:
22.6
testis:
15.9
DEPDC1B
ENSSSCG00000016932
ENSG00000035499
DEP domain containing 1B
Tissue enhanced
Detected in many
lymphoid tissue:
15.0
testis:
12.3
DIAPH3
ENSSSCG00000009448
ENSG00000139734
Diaphanous related formin 3
Tissue enhanced
Detected in many
lymphoid tissue:
19.2
mouth:
12.1
testis:
21.5
DNMT1
ENSSSCG00000013659
ENSG00000130816
DNA (cytosine-5)-methyltransferase 1
Low tissue specificity
Detected in all
DTL
ENSSSCG00000015600
ENSG00000143476
Denticleless E3 ubiquitin protein ligase homolog
Tissue enhanced
Detected in many
lymphoid tissue:
17.4
testis:
27.6
DUT
ENSSSCG00000032141
ENSG00000128951
Deoxyuridine triphosphatase
Low tissue specificity
Detected in all
E2F1
ENSSSCG00000007268
ENSG00000101412
E2F transcription factor 1
Tissue enhanced
Detected in many
lymphoid tissue:
25.7
E2F2
ENSSSCG00000032710
ENSG00000007968
E2F transcription factor 2
Tissue enhanced
Detected in many
large intestine:
16.2
lymphoid tissue:
38.3
stomach:
18.6
E2F3
ENSSSCG00000040178
ENSG00000112242
E2F transcription factor 3
Low tissue specificity
Detected in all
E2F7
ENSSSCG00000000950
ENSG00000165891
E2F transcription factor 7
Tissue enhanced
Detected in many
brain:
13.0
lymphoid tissue:
16.4
upper respiratory system:
15.9
E2F8
ENSSSCG00000013352
ENSG00000129173
E2F transcription factor 8
Tissue enhanced
Detected in many
lymphoid tissue:
27.2
ECT2
ENSSSCG00000035746
ENSG00000114346
Epithelial cell transforming 2
Tissue enhanced
Detected in all
lymphoid tissue:
23.4
testis:
23.6
EME1
ENSSSCG00000017571
ENSG00000154920
Essential meiotic structure-specific endonuclease 1
Tissue enhanced
Detected in many
male glands:
10.8
testis:
20.6
ERCC6L
ENSSSCG00000021834
ENSG00000186871
ERCC excision repair 6 like, spindle assembly checkpoint helicase
Tissue enhanced
Detected in many
lymphoid tissue:
10.2
testis:
9.3
ESCO2
ENSSSCG00000009670
ENSG00000171320
Establishment of sister chromatid cohesion N-acetyltransferase 2
Group enriched
Detected in many
lymphoid tissue:
10.9
testis:
37.1
ESPL1
ENSSSCG00000000265
ENSG00000135476
Extra spindle pole bodies like 1, separase
Tissue enhanced
Detected in many
lymphoid tissue:
12.6
testis:
25.7
EXO1
ENSSSCG00000010865
ENSG00000174371
Exonuclease 1
Tissue enhanced
Detected in many
lymphoid tissue:
21.6
upper respiratory system:
13.0
EXOSC2
ENSSSCG00000005704
ENSG00000130713
Exosome component 2
Low tissue specificity
Detected in all
EZH2
ENSSSCG00000028840
ENSG00000106462
Histone-lysine N-methyltransferase EZH2
Tissue enhanced
Detected in all
lymphoid tissue:
51.5
testis:
48.3
FAM122B
ENSSSCG00000012685
ENSG00000156504
Family with sequence similarity 122B
Low tissue specificity
Detected in all
FANCA
ENSSSCG00000024687
ENSG00000187741
Fanconi anemia complementation group A
Low tissue specificity
Detected in all
FANCB
ENSSSCG00000012130
ENSG00000181544
Fanconi anemia complementation group B
Tissue enhanced
Detected in many
epididymis:
15.1
lymphoid tissue:
11.8
FANCD2
ENSSSCG00000011563
ENSG00000144554
Fanconi anemia complementation group D2
Tissue enhanced
Detected in many
testis:
37.0
FANCI
ENSSSCG00000001837
ENSG00000140525
Fanconi anemia complementation group I
Tissue enhanced
Detected in many
lymphoid tissue:
20.6
FBXO5
ENSSSCG00000004077
ENSG00000112029
F-box protein 5
Tissue enhanced
Detected in many
lymphoid tissue:
19.5
FIGNL1
ENSSSCG00000023303
ENSG00000132436
Fidgetin like 1
Tissue enhanced
Detected in many
lymphoid tissue:
11.7
FOXM1
ENSSSCG00000000739
ENSG00000111206
Forkhead box M1
Tissue enriched
Detected in many
testis:
47.4
GEN1
ENSSSCG00000008613
ENSG00000178295
GEN1, Holliday junction 5' flap endonuclease
Tissue enhanced
Detected in many
lymphoid tissue:
15.1
testis:
8.2
GTSE1
ENSSSCG00000000002
ENSG00000075218
G2 and S-phase expressed 1
Tissue enhanced
Detected in many
heart:
21.5
lymphoid tissue:
14.2
HASPIN
ENSSSCG00000031821
ENSG00000177602
Histone H3 associated protein kinase
Tissue enriched
Detected in many
testis:
73.8
HELLS
ENSSSCG00000010486
ENSG00000119969
Helicase, lymphoid specific
Low tissue specificity
Detected in all
HIST1H1D
ENSSSCG00000001137
ENSG00000124575
Histone cluster 1 H1 family member d
Tissue enhanced
Detected in all
lymphoid tissue:
98.1
HIST1H1E
ENSSSCG00000033672
ENSG00000168298
Histone cluster 1 H1 family member e
Low tissue specificity
Detected in all
HIST1H2AC
ENSSSCG00000033606
ENSG00000180573
Histone cluster 1 H2A family member c
Low tissue specificity
Detected in all
HIST1H2AJ
ENSSSCG00000032609
ENSG00000276368
Histone cluster 1 H2A family member j
Tissue enhanced
Detected in many
lymphoid tissue:
104.2
upper respiratory system:
68.0
HIST1H2BB
ENSSSCG00000031122
ENSG00000276410
Histone cluster 1 H2B family member b
Tissue enhanced
Detected in all
lymphoid tissue:
131.4
HIST1H2BN
ENSSSCG00000040923
ENSG00000233822
Histone cluster 1 H2B family member n
Tissue enhanced
Detected in many
lymphoid tissue:
119.5
upper respiratory system:
51.8
HIST1H3E
ENSSSCG00000039112
ENSG00000278272
Histone H3.1
Tissue enhanced
Detected in many
lymphoid tissue:
96.8
upper respiratory system:
67.8
HJURP
ENSSSCG00000016313
ENSG00000123485
Holliday junction recognition protein
Tissue enhanced
Detected in many
lymphoid tissue:
11.2
testis:
15.2
HMBS
ENSSSCG00000015108
ENSG00000256269
Porphobilinogen deaminase
Low tissue specificity
Detected in all
HMGB2
ENSSSCG00000009704
ENSG00000164104
High mobility group protein B2
Tissue enhanced
Detected in all
lymphoid tissue:
86.5
HMGN5
ENSSSCG00000032946
ENSG00000198157
High mobility group nucleosome binding domain 5
Tissue enhanced
Detected in all
lymphoid tissue:
21.5
HMMR
ENSSSCG00000017022
ENSG00000072571
Hyaluronan mediated motility receptor
Low tissue specificity
Detected in all
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