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Human disease related genes
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UMAP gene cluster
Pig tissue group category (RNA)
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Other diseases
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Subclass
Class
Biological process
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Disease
Keyword
Chromosome
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
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18
MT
Unmapped
X
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
Cartilage
Heart
Kidney
Large intestine
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Skin
Small intestine
Stomach 1
Upper respiratory system
Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
THE PIG ATLAS
TISSUE SPECIFIC PROTEOME
UMAP GENE CLUSTERING
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406 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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1.
Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
RBMS1
ENSSSCG00000015888
ENSG00000153250
RNA binding motif single stranded interacting protein 1
Low tissue specificity
Detected in all
RELA
ENSSSCG00000012981
ENSG00000173039
Transcription factor p65
Low tissue specificity
Detected in all
RHOD
ENSSSCG00000022726
ENSG00000173156
Ras homolog family member D
Tissue enhanced
Detected in many
cartilage:
34.1
RIPOR3
ENSSSCG00000007470
ENSG00000042062
RIPOR family member 3
Tissue enhanced
Detected in many
epididymis:
21.1
RNF166
ENSSSCG00000034455
ENSG00000158717
Ring finger protein 166
Low tissue specificity
Detected in all
RNPEPL1
ENSSSCG00000016367
ENSG00000142327
Arginyl aminopeptidase like 1
Tissue enhanced
Detected in all
stomach:
72.2
RRBP1
ENSSSCG00000024692
ENSG00000125844
Ribosome binding protein 1
Tissue enhanced
Detected in all
epididymis:
76.3
RSAD1
ENSSSCG00000017567
ENSG00000136444
Radical S-adenosyl methionine domain containing 1
Low tissue specificity
Detected in many
RXRA
ENSSSCG00000038220
ENSG00000186350
Retinoid X receptor alpha
Low tissue specificity
Detected in all
SCMH1
ENSSSCG00000003971
ENSG00000010803
Scm polycomb group protein homolog 1
Low tissue specificity
Detected in all
SDC4
ENSSSCG00000038594
ENSG00000124145
Syndecan-4
Tissue enhanced
Detected in all
ovary:
95.3
SEC24D
ENSSSCG00000009112
ENSG00000150961
SEC24 homolog D, COPII coat complex component
Low tissue specificity
Detected in all
SEC31A
ENSSSCG00000009244
ENSG00000138674
SEC31 homolog A, COPII coat complex component
Low tissue specificity
Detected in all
SEMA3B
ENSSSCG00000011400
ENSG00000012171
Semaphorin 3B
Tissue enhanced
Detected in many
vagus nerve:
112.4
SEMA3F
ENSSSCG00000011398
ENSG00000001617
Semaphorin 3F
Tissue enhanced
Detected in many
mesothelial tissue:
41.2
SERTAD3
ENSSSCG00000025448
ENSG00000167565
SERTA domain-containing protein 3
Low tissue specificity
Detected in all
SETBP1
ENSSSCG00000004490
ENSG00000152217
SET binding protein 1
Low tissue specificity
Detected in all
SGMS2
ENSSSCG00000009152
ENSG00000164023
Sphingomyelin synthase 2
Tissue enhanced
Detected in all
choroid plexus:
40.1
SGSH
ENSSSCG00000017152
ENSG00000181523
N-sulfoglucosamine sulfohydrolase
Low tissue specificity
Detected in all
SHC1
ENSSSCG00000006539
ENSG00000160691
SHC adaptor protein 1
Low tissue specificity
Detected in all
SHMT2
ENSSSCG00000037077
ENSG00000182199
Serine hydroxymethyltransferase 2
Tissue enhanced
Detected in all
cartilage:
56.8
SIX1
ENSSSCG00000005087
ENSG00000126778
Homeobox protein SIX1
Tissue enhanced
Detected in many
pituitary gland:
39.5
salivary gland:
31.6
skeletal muscle:
47.3
SIX2
ENSSSCG00000008446
ENSG00000170577
SIX homeobox 2
Tissue enhanced
Detected in many
dura mater:
40.6
salivary gland:
30.5
upper respiratory system:
27.2
SIX4
ENSSSCG00000005089
ENSG00000100625
Homeobox protein SIX4
Tissue enhanced
Detected in many
male glands:
28.3
salivary gland:
30.7
skeletal muscle:
26.9
upper respiratory system:
22.6
SIX5
ENSSSCG00000035791
ENSG00000177045
SIX homeobox 5
Low tissue specificity
Detected in many
SLC16A3
ENSSSCG00000024018
ENSG00000141526
Solute carrier family 16 member 3
Tissue enhanced
Detected in many
cartilage:
38.5
lens:
26.2
skeletal muscle:
44.7
SLC16A5
ENSSSCG00000017215
ENSG00000170190
Solute carrier family 16 member 5
Tissue enhanced
Detected in many
kidney:
28.9
urinary bladder:
51.7
SLC25A24
ENSSSCG00000006848
ENSG00000085491
Calcium-binding mitochondrial carrier protein SCaMC-1
Tissue enhanced
Detected in all
large intestine:
51.3
SLC25A29
ENSSSCG00000002520
ENSG00000197119
Solute carrier family 25 member 29
Low tissue specificity
Detected in all
SLC2A4RG
ENSSSCG00000037562
ENSG00000125520
SLC2A4 regulator
Tissue enhanced
Detected in all
lens:
41.2
SLC4A2
ENSSSCG00000021475
ENSG00000164889
Solute carrier family 4 member 2
Tissue enriched
Detected in all
choroid plexus:
125.1
SLC5A6
ENSSSCG00000008550
ENSG00000138074
Solute carrier family 5 member 6
Tissue enhanced
Detected in all
liver:
51.1
SLCO4A1
ENSSSCG00000039419
ENSG00000101187
Solute carrier organic anion transporter family member 4A1
Tissue enhanced
Detected in many
epididymis:
59.5
male glands:
33.9
mesothelial tissue:
25.0
SMAD1
ENSSSCG00000009040
ENSG00000170365
Mothers against decapentaplegic homolog 1
Low tissue specificity
Detected in all
SMAD3
ENSSSCG00000004952
ENSG00000166949
Mothers against decapentaplegic homolog 3
Low tissue specificity
Detected in all
SMOC2
ENSSSCG00000004013
ENSG00000112562
SPARC related modular calcium binding 2
Tissue enhanced
Detected in many
cervix:
64.8
ductus deferens:
56.4
endometrium:
41.5
SND1
ENSSSCG00000016590
ENSG00000197157
Staphylococcal nuclease and tudor domain containing 1
Low tissue specificity
Detected in all
SNX15
ENSSSCG00000013012
ENSG00000110025
Sorting nexin 15
Low tissue specificity
Detected in all
SNX9
ENSSSCG00000030535
ENSG00000130340
Sorting nexin 9
Low tissue specificity
Detected in all
SPACA6
ENSSSCG00000003238
ENSG00000182310
Sperm acrosome associated 6
Low tissue specificity
Detected in all
SREBF1
ENSSSCG00000033626
ENSG00000072310
Sterol regulatory element-binding protein 1
Low tissue specificity
Detected in all
SSFA2
ENSSSCG00000038730
ENSG00000138434
Sperm specific antigen 2
Low tissue specificity
Detected in all
SSH3
ENSSSCG00000027956
ENSG00000172830
Slingshot protein phosphatase 3
Low tissue specificity
Detected in many
ST5
ENSSSCG00000014568
ENSG00000166444
Suppression of tumorigenicity 5
Low tissue specificity
Detected in all
STC2
ENSSSCG00000016983
ENSG00000113739
Stanniocalcin-2 precursor
Tissue enhanced
Detected in all
cartilage:
31.8
STK3
ENSSSCG00000006074
ENSG00000104375
Serine/threonine kinase 3
Low tissue specificity
Detected in all
STON2
ENSSSCG00000002412
ENSG00000140022
Stonin 2
Low tissue specificity
Detected in all
STX4
ENSSSCG00000007768
ENSG00000103496
Syntaxin 4
Low tissue specificity
Detected in all
SUN2
ENSSSCG00000000094
ENSG00000100242
Sad1 and UNC84 domain containing 2
Low tissue specificity
Detected in all
SUSD2
ENSSSCG00000025393
ENSG00000099994
Sushi domain containing 2
Tissue enhanced
Detected in many
kidney:
42.5
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