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UMAP gene cluster
Pig tissue group category (RNA)
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Gene name
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Subclass
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Biological process
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Disease
Keyword
Chromosome
1
2
3
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5
6
7
8
9
10
11
12
13
14
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MT
Unmapped
X
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
Cartilage
Heart
Kidney
Large intestine
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Skin
Small intestine
Stomach 1
Upper respiratory system
Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
THE PIG ATLAS
TISSUE SPECIFIC PROTEOME
UMAP GENE CLUSTERING
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406 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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1.
Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
SYNE2
ENSSSCG00000005110
ENSG00000054654
Spectrin repeat containing nuclear envelope protein 2
Low tissue specificity
Detected in many
SYTL4
ENSSSCG00000012484
ENSG00000102362
Synaptotagmin like 4
Tissue enhanced
Detected in many
pituitary gland:
34.7
TADA2B
ENSSSCG00000029624
ENSG00000173011
Transcriptional adaptor 2B
Low tissue specificity
Detected in all
TAF5L
ENSSSCG00000010187
ENSG00000135801
TATA-box binding protein associated factor 5 like
Low tissue specificity
Detected in all
TANC1
ENSSSCG00000015880
ENSG00000115183
Tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 1
Low tissue specificity
Detected in all
TAX1BP3
ENSSSCG00000017866
ENSG00000213977
Tax1 binding protein 3
Low tissue specificity
Detected in all
TBC1D16
ENSSSCG00000017159
ENSG00000167291
TBC1 domain family member 16
Low tissue specificity
Detected in many
TBX3
ENSSSCG00000009865
ENSG00000135111
T-box 3
Tissue enhanced
Detected in many
adrenal gland:
41.2
male glands:
87.6
thyroid gland:
38.6
TCEA3
ENSSSCG00000032674
ENSG00000204219
Transcription elongation factor A3
Tissue enhanced
Detected in many
male glands:
79.9
skeletal muscle:
56.6
TEAD3
ENSSSCG00000001544
ENSG00000007866
Transcriptional enhancer factor TEF-5
Low tissue specificity
Detected in all
TGIF1
ENSSSCG00000024174
ENSG00000177426
Homeobox protein TGIF1 isoform c
Low tissue specificity
Detected in many
TGIF2
ENSSSCG00000036002
ENSG00000118707
TGFB induced factor homeobox 2
Low tissue specificity
Detected in all
TGM2
ENSSSCG00000023522
ENSG00000198959
Transglutaminase 2
Low tissue specificity
Detected in many
THBS1
ENSSSCG00000004789
ENSG00000137801
Thrombospondin-1 precursor
Tissue enhanced
Detected in many
male glands:
224.8
ovary:
175.2
TLR4
ENSSSCG00000005503
ENSG00000136869
Toll-like receptor 4 isoform 1 precursor
Tissue enhanced
Detected in many
male glands:
40.1
TMEM214
ENSSSCG00000008559
ENSG00000119777
Transmembrane protein 214
Low tissue specificity
Detected in all
TMOD3
ENSSSCG00000004626
ENSG00000138594
Tropomodulin-3
Low tissue specificity
Detected in all
TMPPE
ENSSSCG00000037371
ENSG00000188167
Transmembrane protein with metallophosphoesterase domain
Tissue enhanced
Detected in all
male glands:
42.8
TNKS1BP1
ENSSSCG00000028527
ENSG00000149115
Tankyrase 1 binding protein 1
Low tissue specificity
Detected in all
TP53I13
ENSSSCG00000017788
ENSG00000167543
Tumor protein p53 inducible protein 13
Low tissue specificity
Detected in all
TPCN2
ENSSSCG00000012875
ENSG00000162341
Two pore segment channel 2
Tissue enriched
Detected in all
kidney:
79.8
TPRA1
ENSSSCG00000011623
ENSG00000163870
Transmembrane protein adipocyte associated 1
Low tissue specificity
Detected in all
TRAF3IP2
ENSSSCG00000004420
ENSG00000056972
TRAF3 interacting protein 2
Low tissue specificity
Detected in many
TRAM2
ENSSSCG00000038401
ENSG00000065308
Translocation associated membrane protein 2
Low tissue specificity
Detected in many
TRIB1
ENSSSCG00000038500
ENSG00000173334
Tribbles pseudokinase 1
Low tissue specificity
Detected in all
TRPM5
ENSSSCG00000039644
ENSG00000070985
Transient receptor potential cation channel subfamily M member 5
Tissue enriched
Detected in some
kidney:
89.7
TRPS1
ENSSSCG00000006018
ENSG00000104447
Transcriptional repressor GATA binding 1
Tissue enhanced
Detected in all
cartilage:
75.0
male glands:
80.1
TSHZ1
ENSSSCG00000004861
ENSG00000179981
Teashirt zinc finger homeobox 1
Low tissue specificity
Detected in all
TSKU
ENSSSCG00000014871
ENSG00000182704
Tsukushi, small leucine rich proteoglycan
Tissue enhanced
Detected in many
kidney:
62.7
lens:
49.8
ovary:
81.7
TSPAN14
ENSSSCG00000010341
ENSG00000108219
Tetraspanin 14
Low tissue specificity
Detected in all
TXNDC5
ENSSSCG00000034131
ENSG00000239264
Thioredoxin domain containing 5
Low tissue specificity
Detected in all
UAP1
ENSSSCG00000006340
ENSG00000117143
UDP-N-acetylglucosamine pyrophosphorylase 1
Low tissue specificity
Detected in all
UBAP2
ENSSSCG00000010987
ENSG00000137073
Ubiquitin associated protein 2
Low tissue specificity
Detected in all
UNC93A
ENSSSCG00000027404
ENSG00000112494
Unc-93 homolog A
Tissue enhanced
Detected in many
adipose tissue:
43.5
VAMP8
ENSSSCG00000022820
ENSG00000118640
Vesicle associated membrane protein 8
Low tissue specificity
Detected in all
VANGL1
ENSSSCG00000006746
ENSG00000173218
VANGL planar cell polarity protein 1
Low tissue specificity
Detected in all
VEGFA
ENSSSCG00000001695
ENSG00000112715
Vascular endothelial growth factor A precursor
Tissue enhanced
Detected in all
thyroid gland:
94.9
VSIG10
ENSSSCG00000009852
ENSG00000176834
V-set and immunoglobulin domain containing 10
Low tissue specificity
Detected in all
WASF2
ENSSSCG00000003577
ENSG00000158195
Wiskott-Aldrich syndrome protein family member 2
Low tissue specificity
Detected in all
WBP1L
ENSSSCG00000029594
ENSG00000166272
WW domain binding protein 1 like
Low tissue specificity
Detected in all
WNT11
ENSSSCG00000022347
ENSG00000085741
Wnt family member 11
Tissue enhanced
Detected in all
cartilage:
30.9
WWC2
ENSSSCG00000021731
ENSG00000151718
WW and C2 domain containing 2
Low tissue specificity
Detected in all
WWP2
ENSSSCG00000022609
ENSG00000198373
WW domain containing E3 ubiquitin protein ligase 2
Tissue enriched
Detected in all
cartilage:
172.4
YES1
ENSSSCG00000031942
ENSG00000176105
YES proto-oncogene 1, Src family tyrosine kinase
Low tissue specificity
Detected in all
ZBTB7C
ENSSSCG00000028076
ENSG00000184828
Zinc finger and BTB domain containing 7C
Tissue enhanced
Detected in many
adrenal gland:
38.4
ZCCHC3
ENSSSCG00000007211
ENSG00000247315
Zinc finger CCHC-type containing 3
Low tissue specificity
Detected in all
ZFAND2B
ENSSSCG00000016208
ENSG00000158552
Zinc finger AN1-type containing 2B
Low tissue specificity
Detected in all
ZFHX3
ENSSSCG00000002752
ENSG00000140836
Zinc finger homeobox 3
Low tissue specificity
Detected in all
ZNF219
ENSSSCG00000038313
ENSG00000165804
Zinc finger protein 219
Low tissue specificity
Detected in all
ZNF319
ENSSSCG00000002808
ENSG00000166188
Zinc finger protein 319
Low tissue specificity
Detected in all
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