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Human disease related genes
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UMAP gene cluster
Pig tissue group category (RNA)
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Keyword
Chromosome
1
2
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6
7
8
9
10
11
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MT
Unmapped
X
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
Cartilage
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Lymphoid tissue
Male glands
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Mouth
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Stomach 1
Upper respiratory system
Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
THE PIG ATLAS
TISSUE SPECIFIC PROTEOME
UMAP GENE CLUSTERING
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406 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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1.
Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
P2RY2
ENSSSCG00000040207
ENSG00000175591
P2Y purinoceptor 2
Tissue enhanced
Detected in many
vagus nerve:
52.1
P3H2
ENSSSCG00000011813
ENSG00000090530
Prolyl 3-hydroxylase 2
Tissue enhanced
Detected in many
lens:
66.7
P4HB
ENSSSCG00000039148
ENSG00000185624
Prolyl 4-hydroxylase subunit beta
Low tissue specificity
Detected in all
PABPC4
ENSSSCG00000003660
ENSG00000090621
Poly(A) binding protein cytoplasmic 4
Low tissue specificity
Detected in all
PAFAH2
ENSSSCG00000038619
ENSG00000158006
Platelet activating factor acetylhydrolase 2
Low tissue specificity
Detected in all
PAK4
ENSSSCG00000021333
ENSG00000130669
P21 (RAC1) activated kinase 4
Low tissue specificity
Detected in all
PAPPA
ENSSSCG00000005498
ENSG00000182752
Pappalysin 1
Tissue enhanced
Detected in many
cartilage:
64.8
PARD3
ENSSSCG00000011103
ENSG00000148498
Par-3 family cell polarity regulator
Low tissue specificity
Detected in all
PARD3B
ENSSSCG00000016123
ENSG00000116117
Par-3 family cell polarity regulator beta
Low tissue specificity
Detected in all
PARP16
ENSSSCG00000004929
ENSG00000138617
Poly(ADP-ribose) polymerase family member 16
Low tissue specificity
Detected in all
PARP4
ENSSSCG00000022957
ENSG00000102699
Poly(ADP-ribose) polymerase family member 4
Low tissue specificity
Detected in all
PAWR
ENSSSCG00000036560
ENSG00000177425
Pro-apoptotic WT1 regulator
Low tissue specificity
Detected in many
PBX3
ENSSSCG00000005604
ENSG00000167081
PBX homeobox 3
Tissue enhanced
Detected in all
brain:
73.0
PCGF2
ENSSSCG00000039198
ENSG00000277258
Polycomb group ring finger 2
Low tissue specificity
Detected in all
PDIA5
ENSSSCG00000011870
ENSG00000065485
Protein disulfide isomerase family A member 5
Low tissue specificity
Detected in all
PDLIM1
ENSSSCG00000010493
ENSG00000107438
PDZ and LIM domain protein 1
Low tissue specificity
Detected in many
PER1
ENSSSCG00000017983
ENSG00000179094
Period circadian regulator 1
Tissue enhanced
Detected in all
cartilage:
119.9
PER2
ENSSSCG00000016338
ENSG00000132326
Period circadian regulator 2
Low tissue specificity
Detected in all
PGBD2
ENSSSCG00000033305
ENSG00000185220
PiggyBac transposable element derived 2
Low tissue specificity
Detected in many
PHF1
ENSSSCG00000001511
ENSG00000112511
PHD finger protein 1
Low tissue specificity
Detected in all
PHF2
ENSSSCG00000008080
ENSG00000197724
PHD finger protein 2
Low tissue specificity
Detected in all
PHLDA2
ENSSSCG00000021597
ENSG00000181649
Pleckstrin homology-like domain family A member 2
Tissue enhanced
Detected in many
urinary bladder:
47.4
PIEZO1
ENSSSCG00000035230
ENSG00000103335
Piezo type mechanosensitive ion channel component 1
Low tissue specificity
Detected in many
PIM3
ENSSSCG00000032936
ENSG00000198355
Pim-3 proto-oncogene, serine/threonine kinase
Low tissue specificity
Detected in all
PKN2
ENSSSCG00000006927
ENSG00000065243
Protein kinase N2
Low tissue specificity
Detected in all
PLCE1
ENSSSCG00000010483
ENSG00000138193
Phospholipase C epsilon 1
Tissue enhanced
Detected in many
cartilage:
33.9
stomach:
42.4
PLD1
ENSSSCG00000011750
ENSG00000075651
Phospholipase D1
Low tissue specificity
Detected in many
PLEKHH3
ENSSSCG00000017391
ENSG00000068137
Pleckstrin homology, MyTH4 and FERM domain containing H3
Low tissue specificity
Detected in all
PLXNB2
ENSSSCG00000035733
ENSG00000196576
Plexin B2
Low tissue specificity
Detected in all
POLH
ENSSSCG00000001683
ENSG00000170734
DNA polymerase eta
Low tissue specificity
Detected in all
PPFIBP2
ENSSSCG00000014598
ENSG00000166387
PPFIA binding protein 2
Low tissue specificity
Detected in all
PPL
ENSSSCG00000007927
ENSG00000118898
Periplakin
Tissue enhanced
Detected in many
cornea:
48.9
lens:
49.6
mouth:
70.7
PPP1R35
ENSSSCG00000007652
ENSG00000160813
Protein phosphatase 1 regulatory subunit 35
Low tissue specificity
Detected in all
PPP1R3B
ENSSSCG00000022797
ENSG00000173281
Protein phosphatase 1 regulatory subunit 3B
Tissue enhanced
Detected in many
liver:
53.7
male glands:
31.1
PPP1R3G
ENSSSCG00000000997
ENSG00000219607
Protein phosphatase 1 regulatory subunit 3G
Tissue enhanced
Detected in many
heart:
21.6
PRELID2
ENSSSCG00000014406
ENSG00000186314
PRELI domain containing 2
Low tissue specificity
Detected in all
PRKAB1
ENSSSCG00000009840
ENSG00000111725
5'-AMP-activated protein kinase subunit beta-1
Low tissue specificity
Detected in all
PRRC1
ENSSSCG00000014252
ENSG00000164244
Proline rich coiled-coil 1
Tissue enhanced
Detected in all
male glands:
62.7
PRRG2
ENSSSCG00000003161
ENSG00000126460
Proline rich and Gla domain 2
Tissue enhanced
Detected in many
male glands:
39.6
PTGER1
ENSSSCG00000013782
ENSG00000160951
Prostaglandin E receptor 1
Tissue enriched
Detected in many
kidney:
18.3
PTGR1
ENSSSCG00000021386
ENSG00000106853
Prostaglandin reductase 1
Tissue enhanced
Detected in all
adipose tissue:
65.0
liver:
50.5
PYCR1
ENSSSCG00000034723
ENSG00000183010
Pyrroline-5-carboxylate reductase 1
Tissue enhanced
Detected in all
cartilage:
48.7
male glands:
82.7
salivary gland:
47.5
PYGL
ENSSSCG00000005024
ENSG00000100504
Glycogen phosphorylase, liver form
Tissue enhanced
Detected in all
cornea:
96.8
RAB3D
ENSSSCG00000016928
ENSG00000105514
RAB3D, member RAS oncogene family
Low tissue specificity
Detected in many
RAF1
ENSSSCG00000024453
ENSG00000132155
Raf-1 proto-oncogene, serine/threonine kinase
Low tissue specificity
Detected in all
RAI14
ENSSSCG00000016824
ENSG00000039560
Ankycorbin
Low tissue specificity
Detected in all
RANBP10
ENSSSCG00000021803
ENSG00000141084
RAN binding protein 10
Low tissue specificity
Detected in all
RARA
ENSSSCG00000017475
ENSG00000131759
Retinoic acid receptor alpha
Low tissue specificity
Detected in all
RARRES1
ENSSSCG00000028623
ENSG00000118849
Retinoic acid receptor responder 1
Tissue enhanced
Detected in all
ovary:
73.5
RBM38
ENSSSCG00000007504
ENSG00000132819
RNA-binding protein 38
Tissue enhanced
Detected in many
lens:
142.6
skeletal muscle:
42.7
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