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Gene name
Human disease related genes
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Within tissue variation
UMAP gene cluster
Pig tissue group category (RNA)
Pig brain category (RNA)
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Gene name
Class
Cancers
Cardiovascular diseases
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Digestive system diseases
Endocrine and metabolic diseases
Immune system diseases
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Other congenital disorders
Other diseases
Reproductive system diseases
Respiratory diseases
Skin diseases
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Subclass
Class
Biological process
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Disease
Keyword
Chromosome
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
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18
MT
Unmapped
X
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
Cartilage
Heart
Kidney
Large intestine
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Skin
Small intestine
Stomach 1
Upper respiratory system
Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
THE PIG ATLAS
TISSUE SPECIFIC PROTEOME
UMAP GENE CLUSTERING
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406 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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1.
Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
2.
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
LTBR
ENSSSCG00000000706
ENSG00000111321
Tumor necrosis factor receptor superfamily member 3 precursor
Low tissue specificity
Detected in all
MAF
ENSSSCG00000040607
ENSG00000178573
MAF bZIP transcription factor
Tissue enhanced
Detected in all
lens:
134.2
MAF1
ENSSSCG00000005915
ENSG00000179632
MAF1 homolog, negative regulator of RNA polymerase III
Low tissue specificity
Detected in all
MAML2
ENSSSCG00000034879
ENSG00000184384
Mastermind like transcriptional coactivator 2
Low tissue specificity
Detected in all
MANSC1
ENSSSCG00000040835
ENSG00000111261
MANSC domain containing 1
Tissue enhanced
Detected in all
male glands:
78.7
MAP3K6
ENSSSCG00000003573
ENSG00000142733
Mitogen-activated protein kinase kinase kinase 6
Tissue enhanced
Detected in many
skin:
24.1
MAPK7
ENSSSCG00000031076
ENSG00000166484
Mitogen-activated protein kinase 7
Low tissue specificity
Detected in all
MAPKAPK2
ENSSSCG00000015650
ENSG00000162889
Mitogen-activated protein kinase-activated protein kinase 2
Low tissue specificity
Detected in all
MAPKAPK3
ENSSSCG00000011415
ENSG00000114738
MAP kinase-activated protein kinase 3
Low tissue specificity
Detected in all
MAST4
ENSSSCG00000016956
ENSG00000069020
Microtubule associated serine/threonine kinase family member 4
Tissue enhanced
Detected in all
adrenal gland:
85.9
MAVS
ENSSSCG00000007143
ENSG00000088888
Mitochondrial antiviral-signaling protein
Tissue enhanced
Detected in all
heart:
78.3
MDFIC
ENSSSCG00000021885
ENSG00000135272
MyoD family inhibitor domain containing
Low tissue specificity
Detected in many
MDK
ENSSSCG00000013260
ENSG00000110492
Midkine precursor
Low tissue specificity
Detected in all
MEIS1
ENSSSCG00000039161
ENSG00000143995
Meis homeobox 1
Tissue enhanced
Detected in many
fallopian tube:
45.9
MEX3D
ENSSSCG00000021750
ENSG00000181588
Mex-3 RNA binding family member D
Tissue enriched
Detected in all
testis:
69.4
MGMT
ENSSSCG00000010756
ENSG00000170430
O-6-methylguanine-DNA methyltransferase
Low tissue specificity
Detected in all
MIA3
ENSSSCG00000010834
ENSG00000154305
MIA family member 3, ER export factor
Tissue enhanced
Detected in all
male glands:
108.1
MIIP
ENSSSCG00000003435
ENSG00000116691
Migration and invasion-inhibitory protein
Low tissue specificity
Detected in all
MIXL1
ENSSSCG00000030675
ENSG00000185155
Mix paired-like homeobox
Tissue enhanced
Detected in many
cervix:
5.5
endometrium:
5.7
MKNK2
ENSSSCG00000013448
ENSG00000099875
MAP kinase interacting serine/threonine kinase 2
Tissue enhanced
Detected in all
lens:
99.7
MMP11
ENSSSCG00000010071
ENSG00000099953
Matrix metallopeptidase 11
Low tissue specificity
Detected in all
MORC4
ENSSSCG00000036091
ENSG00000133131
MORC family CW-type zinc finger 4
Low tissue specificity
Detected in all
MRNIP
ENSSSCG00000014015
ENSG00000161010
MRN complex interacting protein
Low tissue specificity
Detected in all
MRPL57
ENSSSCG00000031280
ENSG00000173141
Mitochondrial ribosomal protein L57
Tissue enhanced
Detected in all
male glands:
85.8
MTCP1
ENSSSCG00000012816
ENSG00000214827
Mature T cell proliferation 1
Low tissue specificity
Detected in all
MYO1B
ENSSSCG00000016061
ENSG00000128641
Myosin IB
Tissue enhanced
Detected in all
lens:
79.8
male glands:
71.5
MYO1H
ENSSSCG00000009935
ENSG00000174527
Myosin IH
Tissue enhanced
Detected in some
kidney:
3.9
male glands:
6.8
MYZAP
ENSSSCG00000004598
ENSG00000263155
Myocardial zonula adherens protein
Tissue enriched
Detected in many
heart:
68.8
na
ENSSSCG00000004921
ENSG00000081923
Low tissue specificity
Detected in many
na
ENSSSCG00000004949
Low tissue specificity
Detected in many
na
ENSSSCG00000005358
ENSG00000107338
Low tissue specificity
Detected in many
na
ENSSSCG00000006395
Tissue enhanced
Detected in all
stomach:
177.0
na
ENSSSCG00000007135
ENSG00000101004
Tissue enhanced
Detected in many
cartilage:
37.1
kidney:
24.5
mesothelial tissue:
34.5
na
ENSSSCG00000008511
Tissue enhanced
Detected in many
kidney:
40.3
urinary bladder:
41.8
na
ENSSSCG00000009133
Low tissue specificity
Detected in many
na
ENSSSCG00000009953
ENSG00000197077
Low tissue specificity
Detected in all
na
ENSSSCG00000012074
ENSG00000182240
Low tissue specificity
Detected in many
na
ENSSSCG00000012102
Low tissue specificity
Detected in all
na
ENSSSCG00000012654
ENSG00000156697,ENSG00000253797
Low tissue specificity
Detected in all
na
ENSSSCG00000016091
ENSG00000155729
Low tissue specificity
Detected in all
na
ENSSSCG00000016330
ENSG00000124831
Tissue enhanced
Detected in all
lens:
94.6
na
ENSSSCG00000016459
Low tissue specificity
Detected in many
na
ENSSSCG00000020777
ENSG00000100106
Low tissue specificity
Detected in all
na
ENSSSCG00000022456
Low tissue specificity
Detected in many
na
ENSSSCG00000023012
Tissue enhanced
Detected in many
male glands:
13.1
mesothelial tissue:
14.6
na
ENSSSCG00000024950
Tissue enhanced
Detected in all
mesothelial tissue:
50.4
na
ENSSSCG00000025021
ENSG00000144063
MAL-like protein
Low tissue specificity
Detected in all
na
ENSSSCG00000026196
Low tissue specificity
Detected in all
na
ENSSSCG00000027340
ENSG00000038210,ENSG00000281028
Low tissue specificity
Detected in all
na
ENSSSCG00000030560
ENSG00000140443
Insulin-like growth factor 1 receptor precursor
Low tissue specificity
Detected in all
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