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Human disease related genes
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UMAP gene cluster
Pig tissue group category (RNA)
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Other diseases
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Subclass
Class
Biological process
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Disease
Keyword
Chromosome
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
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18
MT
Unmapped
X
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
Cartilage
Heart
Kidney
Large intestine
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Skin
Small intestine
Stomach 1
Upper respiratory system
Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
THE PIG ATLAS
TISSUE SPECIFIC PROTEOME
UMAP GENE CLUSTERING
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406 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
FIGNL2
ENSSSCG00000033660
ENSG00000261308
Fidgetin like 2
Tissue enhanced
Detected in all
mesothelial tissue:
28.5
FLII
ENSSSCG00000039324
ENSG00000177731
FLII, actin remodeling protein
Low tissue specificity
Detected in all
FNDC3B
ENSSSCG00000011752
ENSG00000075420
Fibronectin type III domain containing 3B
Low tissue specificity
Detected in all
FOXD2
ENSSSCG00000034880
ENSG00000186564
Forkhead box D2
Tissue enhanced
Detected in many
large intestine:
24.6
vagus nerve:
38.9
FYCO1
ENSSSCG00000011317
ENSG00000163820
FYVE and coiled-coil domain-containing protein 1
Tissue enhanced
Detected in all
skeletal muscle:
65.0
GAA
ENSSSCG00000017156
ENSG00000171298
Glucosidase alpha, acid
Low tissue specificity
Detected in all
GADD45A
ENSSSCG00000037066
ENSG00000116717
Growth arrest and DNA damage-inducible protein GADD45 alpha
Tissue enhanced
Detected in many
lens:
32.5
GAN
ENSSSCG00000002690
ENSG00000261609
Gigaxonin
Low tissue specificity
Detected in all
GATA5
ENSSSCG00000007538
ENSG00000130700
GATA binding protein 5
Tissue enhanced
Detected in many
adipose tissue:
32.2
mesothelial tissue:
60.4
small intestine:
29.7
stomach:
45.3
GCN1
ENSSSCG00000009898
ENSG00000089154
GCN1, eIF2 alpha kinase activator homolog
Low tissue specificity
Detected in all
GDF7
ENSSSCG00000028931
ENSG00000143869
Growth differentiation factor 7
Tissue enhanced
Detected in some
cervix:
34.2
ductus deferens:
10.1
male glands:
25.3
upper respiratory system:
10.6
GEMIN5
ENSSSCG00000017066
ENSG00000082516
Gem nuclear organelle associated protein 5
Tissue enhanced
Detected in all
cartilage:
52.0
GGCX
ENSSSCG00000027381
ENSG00000115486
Gamma-glutamyl carboxylase
Low tissue specificity
Detected in all
GMPPA
ENSSSCG00000023935
ENSG00000144591
Mannose-1-phosphate guanyltransferase alpha
Low tissue specificity
Detected in all
GNPDA1
ENSSSCG00000038940
ENSG00000113552
Glucosamine-6-phosphate isomerase 1
Low tissue specificity
Detected in all
GPC4
ENSSSCG00000012679
ENSG00000076716
Glypican 4
Tissue enhanced
Detected in many
ovary:
45.2
GPER1
ENSSSCG00000026422
ENSG00000164850
G protein-coupled estrogen receptor 1
Tissue enriched
Detected in many
stomach:
73.0
GREB1
ENSSSCG00000025483
ENSG00000196208
Growth regulation by estrogen in breast cancer 1
Tissue enhanced
Detected in many
epididymis:
21.3
ovary:
20.1
penis:
28.8
GRN
ENSSSCG00000017355
ENSG00000030582
Granulins precursor
Low tissue specificity
Detected in all
GTF3A
ENSSSCG00000009305
ENSG00000122034
General transcription factor IIIA
Low tissue specificity
Detected in all
HAS1
ENSSSCG00000003239
ENSG00000105509
Hyaluronan synthase 1
Tissue enhanced
Detected in many
male glands:
40.1
HDLBP
ENSSSCG00000016379
ENSG00000115677
High density lipoprotein binding protein
Low tissue specificity
Detected in all
HES1
ENSSSCG00000031356
ENSG00000114315
Transcription factor HES-1
Tissue enhanced
Detected in all
urinary bladder:
45.1
HHAT
ENSSSCG00000015607
ENSG00000054392
Hedgehog acyltransferase
Tissue enhanced
Detected in all
testis:
31.8
HMG20B
ENSSSCG00000040421
ENSG00000064961
High mobility group 20B
Tissue enhanced
Detected in all
lens:
106.4
HSF4
ENSSSCG00000002792
ENSG00000102878
Heat shock transcription factor 4
Tissue enhanced
Detected in many
epididymis:
58.3
thyroid gland:
127.8
IER3
ENSSSCG00000027607
ENSG00000137331
Immediate early response 3
Tissue enhanced
Detected in many
cartilage:
140.2
IGF2BP2
ENSSSCG00000011795
ENSG00000073792
Insulin like growth factor 2 mRNA binding protein 2
Low tissue specificity
Detected in all
IL17B
ENSSSCG00000014434
ENSG00000127743
Interleukin 17B
Tissue enhanced
Detected in many
cartilage:
51.8
male glands:
48.2
IL17RC
ENSSSCG00000011559
ENSG00000163702
Interleukin 17 receptor C
Low tissue specificity
Detected in many
INAFM2
ENSSSCG00000037661
ENSG00000259330
InaF motif containing 2
Low tissue specificity
Detected in all
ITGB1BP1
ENSSSCG00000029313
ENSG00000119185
Integrin subunit beta 1 binding protein 1
Low tissue specificity
Detected in all
JUP
ENSSSCG00000017428
ENSG00000173801
Junction plakoglobin
Low tissue specificity
Detected in all
KIF13A
ENSSSCG00000020858
ENSG00000137177
Kinesin family member 13A
Low tissue specificity
Detected in all
KLF3
ENSSSCG00000036488
ENSG00000109787
Krueppel-like factor 3
Low tissue specificity
Detected in all
KLF6
ENSSSCG00000035212
ENSG00000067082
Krueppel-like factor 6
Low tissue specificity
Detected in all
KLF7
ENSSSCG00000029998
ENSG00000118263
Krueppel-like factor 7
Low tissue specificity
Detected in all
KLF8
ENSSSCG00000012352
ENSG00000102349
Krueppel-like factor 8
Tissue enhanced
Detected in many
skin:
34.8
LAMA5
ENSSSCG00000032761
ENSG00000130702
Laminin subunit alpha 5
Low tissue specificity
Detected in all
LATS2
ENSSSCG00000036326
ENSG00000150457
Serine/threonine-protein kinase LATS2
Low tissue specificity
Detected in all
LDLR
ENSSSCG00000028512
ENSG00000130164
Low-density lipoprotein receptor precursor
Tissue enhanced
Detected in many
adrenal gland:
153.0
ovary:
76.4
LENG9
ENSSSCG00000003269
ENSG00000275183
Leukocyte receptor cluster member 9
Low tissue specificity
Detected in all
LGALS3
ENSSSCG00000005055
ENSG00000131981
Galectin-3
Tissue enhanced
Detected in many
large intestine:
168.2
lens:
152.6
LGMN
ENSSSCG00000002452
ENSG00000100600
Legumain
Tissue enhanced
Detected in all
kidney:
124.7
synovial tissue:
131.5
LIMA1
ENSSSCG00000032269
ENSG00000050405
LIM domain and actin-binding protein 1
Low tissue specificity
Detected in all
LRIG3
ENSSSCG00000000455
ENSG00000139263
Leucine rich repeats and immunoglobulin like domains 3
Low tissue specificity
Detected in many
LRP10
ENSSSCG00000034465
ENSG00000197324
Low-density lipoprotein receptor-related protein 10 precursor
Low tissue specificity
Detected in all
LRP5
ENSSSCG00000012885
ENSG00000162337
LDL receptor related protein 5
Low tissue specificity
Detected in all
LRRC3
ENSSSCG00000027975
ENSG00000160233
Leucine rich repeat containing 3
Tissue enhanced
Detected in many
liver:
47.7
LSS
ENSSSCG00000021418
ENSG00000160285
Lanosterol synthase
Tissue enhanced
Detected in all
liver:
70.7
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