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Human disease related genes
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UMAP gene cluster
Pig tissue group category (RNA)
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Gene name
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Subclass
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Biological process
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Disease
Keyword
Chromosome
1
2
3
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5
6
7
8
9
10
11
12
13
14
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MT
Unmapped
X
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
Cartilage
Heart
Kidney
Large intestine
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Skin
Small intestine
Stomach 1
Upper respiratory system
Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
THE PIG ATLAS
TISSUE SPECIFIC PROTEOME
UMAP GENE CLUSTERING
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406 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
COG3
ENSSSCG00000023738
ENSG00000136152
Component of oligomeric golgi complex 3
Tissue enhanced
Detected in all
heart:
91.4
COL18A1
ENSSSCG00000038089
ENSG00000182871
Collagen type XVIII alpha 1 chain
Tissue enhanced
Detected in many
liver:
94.5
COX19
ENSSSCG00000038964
ENSG00000240230
COX19, cytochrome c oxidase assembly factor
Low tissue specificity
Detected in all
CPNE8
ENSSSCG00000000778
ENSG00000139117
Copine 8
Tissue enhanced
Detected in many
cartilage:
20.5
CRADD
ENSSSCG00000000910
ENSG00000169372
Suppressor of cytokine signaling 2
Low tissue specificity
Detected in all
CREB3L1
ENSSSCG00000013263
ENSG00000157613
CAMP responsive element binding protein 3 like 1
Tissue enhanced
Detected in all
esophagus:
81.9
male glands:
132.0
salivary gland:
90.7
stomach:
87.6
CRYL1
ENSSSCG00000009268
ENSG00000165475
Lambda-crystallin homolog
Tissue enhanced
Detected in all
kidney:
135.2
CSGALNACT2
ENSSSCG00000010200
ENSG00000169826
Chondroitin sulfate N-acetylgalactosaminyltransferase 2
Low tissue specificity
Detected in all
CTBP2
ENSSSCG00000010739
ENSG00000175029
C-terminal binding protein 2
Low tissue specificity
Detected in all
CTDSP1
ENSSSCG00000036938
ENSG00000144579
CTD small phosphatase 1
Low tissue specificity
Detected in all
CTDSP2
ENSSSCG00000031707
ENSG00000175215
Carboxy-terminal domain RNA polymerase II polypeptide A small phosphatase 2
Low tissue specificity
Detected in all
CTDSPL
ENSSSCG00000028740
ENSG00000144677
CTD small phosphatase like
Low tissue specificity
Detected in all
CTF1
ENSSSCG00000007774
ENSG00000150281
Cardiotrophin 1
Low tissue specificity
Detected in many
CTNNA1
ENSSSCG00000014339
ENSG00000044115
Catenin alpha 1
Low tissue specificity
Detected in all
CTNND1
ENSSSCG00000013174
ENSG00000198561
Catenin delta 1
Low tissue specificity
Detected in all
CTSB
ENSSSCG00000023666
ENSG00000164733
Cathepsin B Cathepsin B light chain Cathepsin B heavy chain
Low tissue specificity
Detected in all
CTSH
ENSSSCG00000001770
ENSG00000103811
Pro-cathepsin H Cathepsin H mini chain Cathepsin H Cathepsin H heavy chain Cathepsin H light chain
Tissue enhanced
Detected in all
ovary:
77.2
synovial tissue:
85.6
CTSZ
ENSSSCG00000007522
ENSG00000101160
Cathepsin Z precursor
Tissue enhanced
Detected in all
synovial tissue:
77.8
DAB2
ENSSSCG00000016857
ENSG00000153071
DAB2, clathrin adaptor protein
Tissue enhanced
Detected in many
epididymis:
99.6
synovial tissue:
92.7
DALRD3
ENSSSCG00000011370
ENSG00000178149
DALR anticodon binding domain containing 3
Low tissue specificity
Detected in all
DCBLD1
ENSSSCG00000004254
ENSG00000164465
Discoidin, CUB and LCCL domain containing 1
Tissue enhanced
Detected in many
lens:
32.3
DCP1A
ENSSSCG00000022616
ENSG00000272886
MRNA-decapping enzyme 1A
Low tissue specificity
Detected in all
DLG5
ENSSSCG00000026268
ENSG00000151208
Discs large MAGUK scaffold protein 5
Tissue enhanced
Detected in all
epididymis:
78.0
DNAJC1
ENSSSCG00000026001
ENSG00000136770
DnaJ heat shock protein family (Hsp40) member C1
Low tissue specificity
Detected in all
DNASE1L1
ENSSSCG00000037032
ENSG00000013563
Deoxyribonuclease-1-like 1 precursor
Low tissue specificity
Detected in many
DNMBP
ENSSSCG00000010544
ENSG00000107554
Dynamin binding protein
Tissue enriched
Detected in all
lens:
96.5
DUSP16
ENSSSCG00000032097
ENSG00000111266
Dual specificity phosphatase 16
Low tissue specificity
Detected in all
DUSP28
ENSSSCG00000028180
ENSG00000188542
Dual specificity phosphatase 28
Low tissue specificity
Detected in all
ECHDC2
ENSSSCG00000003854
ENSG00000121310
Enoyl-CoA hydratase domain containing 2
Tissue enhanced
Detected in all
kidney:
81.4
liver:
79.8
EFNA1
ENSSSCG00000006530
ENSG00000169242
Ephrin-A1 precursor
Low tissue specificity
Detected in all
EFNB1
ENSSSCG00000032728
ENSG00000090776
Ephrin B1
Low tissue specificity
Detected in all
EGFR
ENSSSCG00000022126
ENSG00000146648
Epidermal growth factor receptor precursor
Tissue enhanced
Detected in many
male glands:
80.6
EIF4EBP1
ENSSSCG00000022301
ENSG00000187840
Eukaryotic translation initiation factor 4E-binding protein 1
Low tissue specificity
Detected in all
EIF4EBP3
ENSSSCG00000020835
ENSG00000243056
Eukaryotic translation initiation factor 4E-binding protein 3
Tissue enriched
Detected in all
male glands:
143.5
EMP1
ENSSSCG00000036723
ENSG00000134531
Epithelial membrane protein 1
Tissue enhanced
Detected in many
cornea:
92.1
mouth:
75.9
ENPEP
ENSSSCG00000009132
ENSG00000138792
Glutamyl aminopeptidase
Group enriched
Detected in many
kidney:
65.2
small intestine:
88.1
EPB41L4A
ENSSSCG00000029860
ENSG00000129595
Erythrocyte membrane protein band 4.1 like 4A
Low tissue specificity
Detected in all
EPHA2
ENSSSCG00000003471
ENSG00000142627
EPH receptor A2
Low tissue specificity
Detected in all
ERBB2
ENSSSCG00000017497
ENSG00000141736
Receptor tyrosine-protein kinase erbB-2 precursor
Low tissue specificity
Detected in all
ESR1
ENSSSCG00000025777
ENSG00000091831
Estrogen receptor
Group enriched
Detected in many
cervix:
80.7
endometrium:
72.0
fallopian tube:
57.2
EXT1
ENSSSCG00000006009
ENSG00000182197
Exostosin glycosyltransferase 1
Low tissue specificity
Detected in all
EZR
ENSSSCG00000004058
ENSG00000092820
Ezrin
Tissue enhanced
Detected in all
mesothelial tissue:
172.4
FAM109B
ENSSSCG00000038492
ENSG00000177096
Family with sequence similarity 109 member B
Low tissue specificity
Detected in all
FAM129B
ENSSSCG00000005614
ENSG00000136830
Family with sequence similarity 129 member B
Low tissue specificity
Detected in many
FAM160B2
ENSSSCG00000009614
ENSG00000158863
Family with sequence similarity 160 member B2
Low tissue specificity
Detected in all
FAM162B
ENSSSCG00000038522
ENSG00000183807
Family with sequence similarity 162 member B
Tissue enhanced
Detected in many
pituitary gland:
29.7
salivary gland:
30.9
FAM210B
ENSSSCG00000007492
ENSG00000124098
Protein FAM210B
Low tissue specificity
Detected in all
FAM46A
ENSSSCG00000004464
ENSG00000112773
Family with sequence similarity 46 member A
Low tissue specificity
Detected in all
FAM46B
ENSSSCG00000036755
ENSG00000158246
Family with sequence similarity 46 member B
Tissue enhanced
Detected in many
smooth muscle:
36.4
FDPS
ENSSSCG00000006512
ENSG00000160752
Farnesyl pyrophosphate synthase precursor
Low tissue specificity
Detected in all
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