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Human disease related genes
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UMAP gene cluster
Pig tissue group category (RNA)
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Other diseases
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Subclass
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Keyword
Chromosome
1
2
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5
6
7
8
9
10
11
12
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MT
Unmapped
X
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
Cartilage
Heart
Kidney
Large intestine
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Skin
Small intestine
Stomach 1
Upper respiratory system
Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
THE PIG ATLAS
TISSUE SPECIFIC PROTEOME
UMAP GENE CLUSTERING
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544 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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1.
Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
PDCD6IP
ENSSSCG00000011237
ENSG00000170248
Programmed cell death 6 interacting protein
Low tissue specificity
Detected in all
PDPK1
ENSSSCG00000037719
ENSG00000140992
3-phosphoinositide dependent protein kinase 1
Low tissue specificity
Detected in all
PDXDC1
ENSSSCG00000039119
ENSG00000179889
Pyridoxal dependent decarboxylase domain containing 1
Tissue enhanced
Detected in all
male glands:
101.4
PELO
ENSSSCG00000016884
ENSG00000152684
Pelota mRNA surveillance and ribosome rescue factor
Low tissue specificity
Detected in all
PEPD
ENSSSCG00000002868
ENSG00000124299
Peptidase D
Tissue enhanced
Detected in all
kidney:
60.2
PER3
ENSSSCG00000028572
ENSG00000049246
Period circadian regulator 3
Low tissue specificity
Detected in all
PEX16
ENSSSCG00000013267
ENSG00000121680
Peroxisomal biogenesis factor 16
Low tissue specificity
Detected in all
PEX26
ENSSSCG00000027190
ENSG00000215193
Peroxisomal biogenesis factor 26
Low tissue specificity
Detected in all
PEX5
ENSSSCG00000025252
ENSG00000139197
Peroxisomal biogenesis factor 5
Low tissue specificity
Detected in all
PFKFB3
ENSSSCG00000011133
ENSG00000170525
6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3
Tissue enhanced
Detected in many
cartilage:
45.0
kidney:
49.1
skeletal muscle:
57.0
PGD
ENSSSCG00000003402
ENSG00000142657
Phosphogluconate dehydrogenase
Low tissue specificity
Detected in all
PGS1
ENSSSCG00000036308
ENSG00000087157
Phosphatidylglycerophosphate synthase 1
Low tissue specificity
Detected in all
PHC1
ENSSSCG00000000661
ENSG00000111752
Polyhomeotic-like protein 1
Tissue enhanced
Detected in all
testis:
51.1
PIH1D1
ENSSSCG00000003169
ENSG00000104872
PIH1 domain-containing protein 1
Low tissue specificity
Detected in all
PLEKHA2
ENSSSCG00000033367
ENSG00000169499
Pleckstrin homology domain containing A2
Tissue enhanced
Detected in all
lens:
59.0
PLEKHG3
ENSSSCG00000002276
ENSG00000126822
Pleckstrin homology and RhoGEF domain containing G3
Low tissue specificity
Detected in all
PLP2
ENSSSCG00000012294
ENSG00000102007
Proteolipid protein 2
Low tissue specificity
Detected in all
PLPP1
ENSSSCG00000016912
ENSG00000067113
Phospholipid phosphatase 1
Low tissue specificity
Detected in all
PLXNA1
ENSSSCG00000024001
ENSG00000114554
Plexin A1
Low tissue specificity
Detected in all
PNPLA3
ENSSSCG00000027266
ENSG00000100344
Patatin-like phospholipase domain-containing protein 3
Tissue enriched
Detected in some
lens:
35.6
POFUT1
ENSSSCG00000007244
ENSG00000101346
GDP-fucose protein O-fucosyltransferase 1 precursor
Low tissue specificity
Detected in all
POFUT2
ENSSSCG00000012088
ENSG00000186866
Protein O-fucosyltransferase 2
Low tissue specificity
Detected in all
POLA2
ENSSSCG00000012997
ENSG00000014138
DNA polymerase alpha 2, accessory subunit
Low tissue specificity
Detected in all
POLD2
ENSSSCG00000016753
ENSG00000106628
DNA polymerase delta subunit 2
Low tissue specificity
Detected in all
POLDIP3
ENSSSCG00000000039
ENSG00000100227
DNA polymerase delta interacting protein 3
Low tissue specificity
Detected in all
POLL
ENSSSCG00000010564
ENSG00000166169
DNA polymerase lambda
Low tissue specificity
Detected in all
POLR3D
ENSSSCG00000009622
ENSG00000168495
RNA polymerase III subunit D
Low tissue specificity
Detected in all
PPARA
ENSSSCG00000000006
ENSG00000186951
Peroxisome proliferator-activated receptor alpha
Tissue enhanced
Detected in all
kidney:
45.2
liver:
68.3
PPP1R14B
ENSSSCG00000037999
ENSG00000173457
Protein phosphatase 1 regulatory subunit 14B
Low tissue specificity
Detected in all
PPP2R3A
ENSSSCG00000033185
ENSG00000073711
Protein phosphatase 2 regulatory subunit B''alpha
Low tissue specificity
Detected in all
PREB
ENSSSCG00000008553
ENSG00000138073
Prolactin regulatory element binding
Low tissue specificity
Detected in all
PREP
ENSSSCG00000004368
ENSG00000085377
Prolyl endopeptidase
Low tissue specificity
Detected in all
PRLR
ENSSSCG00000016830
ENSG00000113494
Prolactin receptor precursor
Tissue enhanced
Detected in many
adrenal gland:
51.2
choroid plexus:
87.3
PRMT7
ENSSSCG00000002763
ENSG00000132600
Protein arginine methyltransferase 7
Low tissue specificity
Detected in all
PRPSAP1
ENSSSCG00000017184
ENSG00000161542
Phosphoribosyl pyrophosphate synthetase associated protein 1
Tissue enhanced
Detected in all
male glands:
48.8
testis:
47.7
PRR5
ENSSSCG00000021748
ENSG00000186654
Proline-rich protein 5
Tissue enriched
Detected in many
lens:
105.4
PTER
ENSSSCG00000022953
ENSG00000165983
Phosphotriesterase-related protein
Tissue enhanced
Detected in all
kidney:
61.1
PTRH1
ENSSSCG00000005615
ENSG00000187024
Probable peptidyl-tRNA hydrolase
Low tissue specificity
Detected in all
PTTG1IP
ENSSSCG00000031249
ENSG00000183255
PTTG1 interacting protein
Low tissue specificity
Detected in all
PXK
ENSSSCG00000011474
ENSG00000168297
PX domain containing serine/threonine kinase like
Low tissue specificity
Detected in all
QSER1
ENSSSCG00000013314
ENSG00000060749
Glutamine and serine rich 1
Low tissue specificity
Detected in all
QSOX1
ENSSSCG00000015535
ENSG00000116260
Quiescin sulfhydryl oxidase 1
Tissue enhanced
Detected in all
liver:
66.8
male glands:
91.5
stomach:
77.5
QTRT1
ENSSSCG00000013637
ENSG00000213339
Queuine tRNA-ribosyltransferase catalytic subunit 1
Low tissue specificity
Detected in all
RAB3GAP2
ENSSSCG00000010824
ENSG00000118873
RAB3 GTPase activating non-catalytic protein subunit 2
Low tissue specificity
Detected in all
RBL2
ENSSSCG00000032648
ENSG00000103479
RB transcriptional corepressor like 2
Low tissue specificity
Detected in all
RBM22
ENSSSCG00000023231
ENSG00000086589
RNA binding motif protein 22
Low tissue specificity
Detected in all
REXO4
ENSSSCG00000023173
ENSG00000148300
REX4 homolog, 3'-5' exonuclease
Low tissue specificity
Detected in all
RFNG
ENSSSCG00000040385
ENSG00000169733
RFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase
Low tissue specificity
Detected in all
RHOC
ENSSSCG00000006777
ENSG00000155366
Ras homolog family member C
Low tissue specificity
Detected in all
RHOG
ENSSSCG00000039656
ENSG00000177105
Rho-related GTP-binding protein RhoG
Tissue enhanced
Detected in many
lens:
158.9
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