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Gene name
Human disease related genes
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Within tissue variation
UMAP gene cluster
Pig tissue group category (RNA)
Pig brain category (RNA)
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Gene name
Class
Cancers
Cardiovascular diseases
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Endocrine and metabolic diseases
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Other congenital disorders
Other diseases
Reproductive system diseases
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Subclass
Class
Biological process
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Disease
Keyword
Chromosome
1
2
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6
7
8
9
10
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12
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MT
Unmapped
X
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
Cartilage
Heart
Kidney
Large intestine
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Skin
Small intestine
Stomach 1
Upper respiratory system
Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
THE PIG ATLAS
TISSUE SPECIFIC PROTEOME
UMAP GENE CLUSTERING
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544 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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1.
Select data columns:
Gene
Expand
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
2.
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
na
ENSSSCG00000005738
ENSG00000160271,ENSG00000285245
Tissue enhanced
Detected in all
lens:
75.1
na
ENSSSCG00000005901
ENSG00000160972
Tissue enhanced
Detected in all
testis:
53.6
na
ENSSSCG00000006157
ENSG00000125459
Protein misato homolog 1
Low tissue specificity
Detected in all
na
ENSSSCG00000007920
ENSG00000118894,ENSG00000145002,ENSG00000186523
Low tissue specificity
Detected in all
na
ENSSSCG00000008057
ENSG00000162066
Low tissue specificity
Detected in all
na
ENSSSCG00000008136
ENSG00000153201
Low tissue specificity
Detected in all
na
ENSSSCG00000008137
ENSG00000169756
LIM and senescent cell antigen-like-containing domain protein 1
Tissue enhanced
Detected in all
lens:
69.2
na
ENSSSCG00000008287
ENSG00000115274
Low tissue specificity
Detected in all
na
ENSSSCG00000009309
Low tissue specificity
Detected in all
na
ENSSSCG00000010053
ENSG00000100014
Tissue enhanced
Detected in all
lens:
60.3
na
ENSSSCG00000010401
ENSG00000099290,ENSG00000172661
Tissue enhanced
Detected in all
male glands:
95.0
na
ENSSSCG00000010706
ENSG00000179134
Low tissue specificity
Detected in all
na
ENSSSCG00000010774
ENSG00000198546
Low tissue specificity
Detected in all
na
ENSSSCG00000010811
ENSG00000136636
Low tissue specificity
Detected in all
na
ENSSSCG00000010818
Tissue enhanced
Detected in many
aorta:
8.6
lens:
16.0
ovary:
21.1
na
ENSSSCG00000011042
ENSG00000148484
Low tissue specificity
Detected in all
na
ENSSSCG00000011234
ENSG00000153551
CKLF-like MARVEL transmembrane domain-containing protein 7
Tissue enhanced
Detected in many
lens:
53.4
lymphoid tissue:
41.5
na
ENSSSCG00000011347
ENSG00000172113
Low tissue specificity
Detected in all
na
ENSSSCG00000012571
Tissue enhanced
Detected in many
cervix:
39.4
lens:
48.1
na
ENSSSCG00000012886
ENSG00000171067
Low tissue specificity
Detected in all
na
ENSSSCG00000012984
ENSG00000142186
Low tissue specificity
Detected in all
na
ENSSSCG00000013453
ENSG00000104886
Low tissue specificity
Detected in all
na
ENSSSCG00000013874
ENSG00000099330
Low tissue specificity
Detected in all
na
ENSSSCG00000014361
ENSG00000120306
Low tissue specificity
Detected in all
na
ENSSSCG00000016119
ENSG00000173166
Tissue enhanced
Detected in all
liver:
87.6
na
ENSSSCG00000016385
Tissue enhanced
Detected in all
epididymis:
54.0
na
ENSSSCG00000016768
ENSG00000168303
Low tissue specificity
Detected in all
na
ENSSSCG00000017394
Low tissue specificity
Detected in all
na
ENSSSCG00000017940
ENSG00000132522
Tissue enhanced
Detected in all
testis:
90.6
na
ENSSSCG00000021314
Low tissue specificity
Detected in all
na
ENSSSCG00000021851
Low tissue specificity
Detected in many
na
ENSSSCG00000022194
Low tissue specificity
Detected in all
na
ENSSSCG00000023195
ENSG00000180479
Low tissue specificity
Detected in all
na
ENSSSCG00000023294
ENSG00000172086
Lysine-rich coiled-coil protein 1
Low tissue specificity
Detected in all
na
ENSSSCG00000023603
ENSG00000153443
Low tissue specificity
Detected in all
na
ENSSSCG00000024500
ENSG00000160226
Low tissue specificity
Detected in all
na
ENSSSCG00000024912
ENSG00000196363
Low tissue specificity
Detected in all
na
ENSSSCG00000026961
ENSG00000198182
Low tissue specificity
Detected in all
na
ENSSSCG00000027013
Cytochrome P450, family 4, subfamily F, polypeptide 55 precursor
Tissue enhanced
Detected in many
male glands:
100.3
na
ENSSSCG00000028097
ENSG00000159592
Low tissue specificity
Detected in all
na
ENSSSCG00000028635
ENSG00000196275
Low tissue specificity
Detected in all
na
ENSSSCG00000028724
ENSG00000156239
Low tissue specificity
Detected in all
na
ENSSSCG00000030183
ENSG00000108433
Low tissue specificity
Detected in all
na
ENSSSCG00000030197
ENSG00000198087
CD2-associated protein
Low tissue specificity
Detected in all
na
ENSSSCG00000031635
Low tissue specificity
Detected in all
na
ENSSSCG00000032001
Low tissue specificity
Detected in all
na
ENSSSCG00000032401
Tissue enhanced
Detected in many
cervix:
28.3
lens:
37.6
na
ENSSSCG00000032552
ENSG00000092871
Tissue enhanced
Detected in all
lens:
51.8
na
ENSSSCG00000032809
Low tissue specificity
Detected in many
na
ENSSSCG00000032937
ENSG00000198142
Low tissue specificity
Detected in all
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