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Human disease related genes
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UMAP gene cluster
Pig tissue group category (RNA)
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Subclass
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Biological process
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Keyword
Chromosome
1
2
3
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5
6
7
8
9
10
11
12
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MT
Unmapped
X
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
Cartilage
Heart
Kidney
Large intestine
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Skin
Small intestine
Stomach 1
Upper respiratory system
Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
THE PIG ATLAS
TISSUE SPECIFIC PROTEOME
UMAP GENE CLUSTERING
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544 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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1.
Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
DNM2
ENSSSCG00000013630
ENSG00000079805
Dynamin 2
Tissue enhanced
Detected in all
male glands:
108.5
DOCK1
ENSSSCG00000035045
ENSG00000150760
Dedicator of cytokinesis 1
Low tissue specificity
Detected in all
DOCK5
ENSSSCG00000009650
ENSG00000147459
Dedicator of cytokinesis 5
Tissue enriched
Detected in many
lens:
100.0
DPF2
ENSSSCG00000012995
ENSG00000133884
Double PHD fingers 2
Low tissue specificity
Detected in all
DPP7
ENSSSCG00000033991
ENSG00000176978
Dipeptidyl peptidase 7
Low tissue specificity
Detected in all
EARS2
ENSSSCG00000010797
ENSG00000103356
Glutamyl-tRNA synthetase 2, mitochondrial
Low tissue specificity
Detected in all
ECHDC3
ENSSSCG00000011119
ENSG00000134463
Enoyl-CoA hydratase domain containing 3
Tissue enhanced
Detected in all
liver:
76.2
EDC4
ENSSSCG00000002771
ENSG00000038358
Enhancer of mRNA decapping 4
Low tissue specificity
Detected in all
EDEM2
ENSSSCG00000007291
ENSG00000088298
ER degradation enhancing alpha-mannosidase like protein 2
Tissue enhanced
Detected in all
epididymis:
59.3
EDNRB
ENSSSCG00000009477
ENSG00000136160
Endothelin receptor type B
Tissue enhanced
Detected in many
adrenal gland:
64.1
choroid plexus:
64.7
cornea:
49.8
ovary:
62.6
EEF1D
ENSSSCG00000006954
ENSG00000104529
Eukaryotic translation elongation factor 1 delta
Low tissue specificity
Detected in all
EHD1
ENSSSCG00000013017
ENSG00000110047
EH domain containing 1
Low tissue specificity
Detected in all
EIF2B4
ENSSSCG00000023140
ENSG00000115211
Eukaryotic translation initiation factor 2B subunit delta
Low tissue specificity
Detected in all
EIF3B
ENSSSCG00000039390
ENSG00000106263
Eukaryotic translation initiation factor 3 subunit B
Low tissue specificity
Detected in all
EIF3D
ENSSSCG00000000141
ENSG00000100353
Eukaryotic translation initiation factor 3 subunit D
Low tissue specificity
Detected in all
EIF4EBP2
ENSSSCG00000034444
ENSG00000148730
Eukaryotic translation initiation factor 4E binding protein 2
Low tissue specificity
Detected in all
EIF4G1
ENSSSCG00000030255
ENSG00000114867
Eukaryotic translation initiation factor 4 gamma 1
Low tissue specificity
Detected in all
EML4
ENSSSCG00000008467
ENSG00000143924
Echinoderm microtubule associated protein like 4
Tissue enhanced
Detected in all
lens:
77.5
ERCC1
ENSSSCG00000036455
ENSG00000012061
DNA excision repair protein ERCC-1
Low tissue specificity
Detected in all
ESS2
ENSSSCG00000010114
ENSG00000100056
Ess-2 splicing factor homolog
Low tissue specificity
Detected in all
EXT2
ENSSSCG00000013281
ENSG00000151348
Exostosin glycosyltransferase 2
Low tissue specificity
Detected in all
FAH
ENSSSCG00000001780
ENSG00000103876
Fumarylacetoacetate hydrolase
Tissue enhanced
Detected in many
adrenal gland:
53.6
liver:
74.4
FAM104A
ENSSSCG00000031686
ENSG00000133193
Family with sequence similarity 104 member A
Tissue enriched
Detected in all
testis:
75.5
FAM114A1
ENSSSCG00000008785
ENSG00000197712
Family with sequence similarity 114 member A1
Tissue enhanced
Detected in all
male glands:
109.8
FAM174B
ENSSSCG00000002265
ENSG00000185442
Family with sequence similarity 174 member B
Tissue enhanced
Detected in many
male glands:
122.3
FAM207A
ENSSSCG00000028571
ENSG00000160256
Family with sequence similarity 207 member A
Low tissue specificity
Detected in all
FAM214A
ENSSSCG00000004617
ENSG00000047346
Family with sequence similarity 214 member A
Low tissue specificity
Detected in all
FAM3A
ENSSSCG00000028934
ENSG00000071889
Family with sequence similarity 3 member A
Low tissue specificity
Detected in all
FASTK
ENSSSCG00000024184
ENSG00000164896
Fas-activated serine/threonine kinase
Low tissue specificity
Detected in all
FAT1
ENSSSCG00000007000
ENSG00000083857
FAT tumor suppressor homolog 1
Tissue enhanced
Detected in all
lens:
86.3
FBXL14
ENSSSCG00000039474
ENSG00000171823
F-box and leucine rich repeat protein 14
Low tissue specificity
Detected in all
FBXO46
ENSSSCG00000038367
ENSG00000177051
F-box protein 46
Low tissue specificity
Detected in all
FGFRL1
ENSSSCG00000036512
ENSG00000127418
Fibroblast growth factor receptor like 1
Tissue enhanced
Detected in many
cartilage:
42.6
liver:
52.5
male glands:
35.3
FIBP
ENSSSCG00000012969
ENSG00000172500
Acidic fibroblast growth factor intracellular-binding protein
Low tissue specificity
Detected in all
FIZ1
ENSSSCG00000033985
ENSG00000179943
FLT3 interacting zinc finger 1
Low tissue specificity
Detected in all
FKBP7
ENSSSCG00000015999
ENSG00000079150
FK506 binding protein 7
Tissue enhanced
Detected in all
cartilage:
51.2
FLOT2
ENSSSCG00000017777
ENSG00000132589
Flotillin 2
Low tissue specificity
Detected in all
FOLR2
ENSSSCG00000014812
ENSG00000165457
Folate receptor 2 precursor
Tissue enhanced
Detected in many
cartilage:
59.1
liver:
94.8
FOXK1
ENSSSCG00000007576
ENSG00000164916
Forkhead box K1
Low tissue specificity
Detected in all
FOXO4
ENSSSCG00000012399
ENSG00000184481
Forkhead box O4
Low tissue specificity
Detected in all
FTL
ENSSSCG00000003153
ENSG00000087086
Ferritin light chain
Tissue enhanced
Detected in all
lens:
546.5
FUBP3
ENSSSCG00000005702
ENSG00000107164
Far upstream element-binding protein 3
Low tissue specificity
Detected in all
FZD6
ENSSSCG00000006052
ENSG00000164930
Frizzled-6 precursor
Low tissue specificity
Detected in all
G6PD
ENSSSCG00000025108
ENSG00000160211
Glucose-6-phosphate dehydrogenase
Low tissue specificity
Detected in all
GALNT2
ENSSSCG00000010185
ENSG00000143641
Polypeptide N-acetylgalactosaminyltransferase 2
Tissue enhanced
Detected in all
male glands:
70.3
GALR1
ENSSSCG00000036984
ENSG00000166573
Galanin receptor 1
Tissue enhanced
Detected in many
choroid plexus:
23.4
urinary bladder:
19.0
GALT
ENSSSCG00000010969
ENSG00000213930
Galactose-1-phosphate uridylyltransferase
Low tissue specificity
Detected in all
GATAD2A
ENSSSCG00000013938
ENSG00000167491
GATA zinc finger domain containing 2A
Low tissue specificity
Detected in all
GATAD2B
ENSSSCG00000006562
ENSG00000143614
GATA zinc finger domain containing 2B
Low tissue specificity
Detected in all
GBF1
ENSSSCG00000010579
ENSG00000107862
Golgi brefeldin A resistant guanine nucleotide exchange factor 1
Low tissue specificity
Detected in all
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