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Gene name
Human disease related genes
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UMAP gene cluster
Pig tissue group category (RNA)
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Other congenital disorders
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Subclass
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Biological process
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Disease
Keyword
Chromosome
1
2
3
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5
6
7
8
9
10
11
12
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MT
Unmapped
X
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
Cartilage
Heart
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Large intestine
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Skin
Small intestine
Stomach 1
Upper respiratory system
Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
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TISSUE SPECIFIC PROTEOME
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544 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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1.
Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
C3orf58
ENSSSCG00000036206
ENSG00000181744
Chromosome 3 open reading frame 58
Low tissue specificity
Detected in all
C7orf26
ENSSSCG00000036192
ENSG00000146576
Chromosome 7 open reading frame 26
Low tissue specificity
Detected in all
C8orf33
ENSSSCG00000005880
ENSG00000182307
Chromosome 8 open reading frame 33
Low tissue specificity
Detected in all
CALCOCO2
ENSSSCG00000017543
ENSG00000136436
Calcium binding and coiled-coil domain 2
Low tissue specificity
Detected in all
CALU
ENSSSCG00000016581
ENSG00000128595
Calumenin
Low tissue specificity
Detected in all
CAPN10
ENSSSCG00000037779
ENSG00000142330
Calpain-10
Low tissue specificity
Detected in all
CAPN2
ENSSSCG00000029411
ENSG00000162909
Calpain-2 catalytic subunit
Low tissue specificity
Detected in all
CCDC130
ENSSSCG00000013755
ENSG00000104957
Coiled-coil domain containing 130
Tissue enhanced
Detected in all
testis:
64.1
CCDC71
ENSSSCG00000011378
ENSG00000177352
Coiled-coil domain containing 71
Low tissue specificity
Detected in all
CCDC86
ENSSSCG00000013105
ENSG00000110104
Coiled-coil domain containing 86
Low tissue specificity
Detected in all
CCM2
ENSSSCG00000016734
ENSG00000136280
CCM2 scaffolding protein
Tissue enhanced
Detected in all
lens:
84.1
CCND3
ENSSSCG00000032284
ENSG00000112576
G1/S-specific cyclin-D3
Low tissue specificity
Detected in all
CCNQ
ENSSSCG00000012770
ENSG00000262919
Cyclin Q
Low tissue specificity
Detected in all
CD9
ENSSSCG00000022230
ENSG00000010278
CD9 antigen
Low tissue specificity
Detected in all
CDK10
ENSSSCG00000025401
ENSG00000185324
Cyclin-dependent kinase 10
Low tissue specificity
Detected in all
CDK5RAP3
ENSSSCG00000017524
ENSG00000108465
CDK5 regulatory subunit associated protein 3
Low tissue specificity
Detected in all
CENPB
ENSSSCG00000035900
ENSG00000125817
Centromere protein B
Low tissue specificity
Detected in all
CHID1
ENSSSCG00000012837
ENSG00000177830
Chitinase domain-containing protein 1 precursor
Low tissue specificity
Detected in all
CHMP1A
ENSSSCG00000023677
ENSG00000131165
Charged multivesicular body protein 1a
Low tissue specificity
Detected in all
CHMP6
ENSSSCG00000017140
ENSG00000176108
Charged multivesicular body protein 6
Low tissue specificity
Detected in all
CLCC1
ENSSSCG00000006841
ENSG00000121940
Chloride channel CLIC like 1
Low tissue specificity
Detected in all
CLDN15
ENSSSCG00000038901
ENSG00000106404
Claudin-15
Group enriched
Detected in many
adipose tissue:
17.5
mesothelial tissue:
34.7
small intestine:
57.1
CNOT11
ENSSSCG00000008167
ENSG00000158435
CCR4-NOT transcription complex subunit 11
Low tissue specificity
Detected in all
COL4A5
ENSSSCG00000012572
ENSG00000188153
Collagen type IV alpha 5 chain
Tissue enriched
Detected in many
lens:
107.3
COQ4
ENSSSCG00000005646
ENSG00000167113
Coenzyme Q4
Low tissue specificity
Detected in all
COQ8B
ENSSSCG00000026331
ENSG00000123815
Coenzyme Q8B
Low tissue specificity
Detected in all
COTL1
ENSSSCG00000037645
ENSG00000103187
Coactosin like F-actin binding protein 1
Tissue enriched
Detected in many
lens:
185.6
CREB3L2
ENSSSCG00000016520
ENSG00000182158
CAMP responsive element binding protein 3 like 2
Tissue enhanced
Detected in all
cartilage:
77.8
CROT
ENSSSCG00000015391
ENSG00000005469
Peroxisomal carnitine O-octanoyltransferase
Tissue enriched
Detected in all
liver:
89.6
CSNK1D
ENSSSCG00000035852
ENSG00000141551
Casein kinase 1 delta
Low tissue specificity
Detected in all
CSNK1G2
ENSSSCG00000013445
ENSG00000133275
Casein kinase 1 gamma 2
Tissue enhanced
Detected in all
testis:
86.9
CTDNEP1
ENSSSCG00000017935
ENSG00000175826
CTD nuclear envelope phosphatase 1
Low tissue specificity
Detected in all
CTTN
ENSSSCG00000031769
ENSG00000085733
Cortactin
Low tissue specificity
Detected in all
CUL4A
ENSSSCG00000009556
ENSG00000139842
Cullin 4A
Low tissue specificity
Detected in all
CYB561
ENSSSCG00000017297
ENSG00000008283
Cytochrome b561
Tissue enhanced
Detected in many
adrenal gland:
75.2
ovary:
51.7
CYHR1
ENSSSCG00000027076
ENSG00000187954
Cysteine and histidine rich 1
Low tissue specificity
Detected in all
CYP27A1
ENSSSCG00000016199
ENSG00000135929
Sterol 26-hydroxylase, mitochondrial
Tissue enriched
Detected in many
liver:
139.3
DAB2IP
ENSSSCG00000005524
ENSG00000136848
DAB2 interacting protein
Low tissue specificity
Detected in all
DAPK3
ENSSSCG00000032170
ENSG00000167657
Death associated protein kinase 3
Tissue enhanced
Detected in all
testis:
66.2
DBNL
ENSSSCG00000016721
ENSG00000136279
Drebrin like
Tissue enhanced
Detected in all
lens:
130.0
DCAF5
ENSSSCG00000039701
ENSG00000139990
DDB1 and CUL4 associated factor 5
Low tissue specificity
Detected in all
DCXR
ENSSSCG00000039873
ENSG00000169738
Dicarbonyl and L-xylulose reductase
Tissue enhanced
Detected in all
thyroid gland:
93.7
DDX23
ENSSSCG00000000176
ENSG00000174243
DEAD-box helicase 23
Low tissue specificity
Detected in all
DDX27
ENSSSCG00000022915
ENSG00000124228
DEAD-box helicase 27
Low tissue specificity
Detected in all
DDX54
ENSSSCG00000009876
ENSG00000123064
DEAD-box helicase 54
Low tissue specificity
Detected in all
DDX56
ENSSSCG00000016745
ENSG00000136271
Probable ATP-dependent RNA helicase DDX56
Low tissue specificity
Detected in all
DHRS1
ENSSSCG00000001991
ENSG00000157379
Dehydrogenase/reductase 1
Low tissue specificity
Detected in all
DMAP1
ENSSSCG00000034096
ENSG00000178028
DNA methyltransferase 1-associated protein 1
Low tissue specificity
Detected in all
DNAJC11
ENSSSCG00000003384
ENSG00000007923
DnaJ heat shock protein family (Hsp40) member C11
Low tissue specificity
Detected in all
DNAL4
ENSSSCG00000000093
ENSG00000100246
Dynein light chain 4, axonemal
Low tissue specificity
Detected in all
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