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Human disease related genes
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UMAP gene cluster
Pig tissue group category (RNA)
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Gene name
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Keyword
Chromosome
1
2
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6
7
8
9
10
11
12
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MT
Unmapped
X
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
Cartilage
Heart
Kidney
Large intestine
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Skin
Small intestine
Stomach 1
Upper respiratory system
Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
THE PIG ATLAS
TISSUE SPECIFIC PROTEOME
UMAP GENE CLUSTERING
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544 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
SNX8
ENSSSCG00000040977
ENSG00000106266
Sorting nexin 8
Tissue enhanced
Detected in all
kidney:
51.2
SORBS1
ENSSSCG00000010494
ENSG00000095637
Sorbin and SH3 domain containing 1
Tissue enhanced
Detected in all
smooth muscle:
127.1
SPHK1
ENSSSCG00000017178
ENSG00000176170
Sphingosine kinase 1
Tissue enhanced
Detected in many
epididymis:
41.9
lens:
21.1
SPINDOC
ENSSSCG00000013048
ENSG00000168005
Spindlin interactor and repressor of chromatin binding
Low tissue specificity
Detected in all
SRP68
ENSSSCG00000017191
ENSG00000167881
Signal recognition particle 68
Low tissue specificity
Detected in all
SSBP3
ENSSSCG00000039594
ENSG00000157216
Single stranded DNA binding protein 3
Low tissue specificity
Detected in all
STARD3
ENSSSCG00000017499
ENSG00000131748
StAR-related lipid transfer protein 3
Low tissue specificity
Detected in all
STK25
ENSSSCG00000016372
ENSG00000115694
Serine/threonine kinase 25
Low tissue specificity
Detected in all
STK40
ENSSSCG00000036832
ENSG00000196182
Serine/threonine kinase 40
Tissue enhanced
Detected in all
lens:
71.4
STN1
ENSSSCG00000010605
ENSG00000107960
CST complex subunit STN1
Low tissue specificity
Detected in all
STX10
ENSSSCG00000013752
ENSG00000104915
Syntaxin 10
Low tissue specificity
Detected in all
SUPT6H
ENSSSCG00000017773
ENSG00000109111
SPT6 homolog, histone chaperone
Low tissue specificity
Detected in all
SYNGR2
ENSSSCG00000031600
ENSG00000108639
Synaptogyrin 2
Tissue enhanced
Detected in many
male glands:
78.2
SYNJ2BP
ENSSSCG00000026389
ENSG00000213463
Synaptojanin-2-binding protein
Low tissue specificity
Detected in all
SYNPO
ENSSSCG00000038453
ENSG00000171992
Synaptopodin
Tissue enhanced
Detected in many
cartilage:
87.7
skeletal muscle:
115.4
TACC2
ENSSSCG00000028063
ENSG00000138162
Transforming acidic coiled-coil-containing protein 2
Tissue enhanced
Detected in all
lens:
113.9
TAF6
ENSSSCG00000034153
ENSG00000106290
TATA-box binding protein associated factor 6
Low tissue specificity
Detected in all
TALDO1
ENSSSCG00000012847
ENSG00000177156
Transaldolase
Low tissue specificity
Detected in all
TBC1D17
ENSSSCG00000003193
ENSG00000104946
TBC1 domain family member 17
Low tissue specificity
Detected in all
TBC1D22A
ENSSSCG00000000955
ENSG00000054611
TBC1 domain family member 22A
Low tissue specificity
Detected in all
TBCC
ENSSSCG00000026741
ENSG00000124659
Tubulin-specific chaperone C
Low tissue specificity
Detected in all
TBL3
ENSSSCG00000037686
ENSG00000183751
Transducin beta like 3
Low tissue specificity
Detected in all
TEN1
ENSSSCG00000017194
ENSG00000257949
TEN1, CST complex subunit
Low tissue specificity
Detected in all
TESK1
ENSSSCG00000005310
ENSG00000107140
Testis-specific kinase 1
Low tissue specificity
Detected in all
TFE3
ENSSSCG00000012287
ENSG00000068323
Transcription factor binding to IGHM enhancer 3
Low tissue specificity
Detected in all
TFIP11
ENSSSCG00000009962
ENSG00000100109
Tuftelin-interacting protein 11
Low tissue specificity
Detected in all
TGFB1
ENSSSCG00000003017
ENSG00000105329
Transforming growth factor beta-1 precursor
Low tissue specificity
Detected in all
TGFBRAP1
ENSSSCG00000024636
ENSG00000135966
Transforming growth factor beta receptor associated protein 1
Low tissue specificity
Detected in all
THAP4
ENSSSCG00000016374
ENSG00000176946
THAP domain containing 4
Low tissue specificity
Detected in all
TIMELESS
ENSSSCG00000000399
ENSG00000111602
Timeless circadian regulator
Tissue enriched
Detected in many
lens:
41.8
TKT
ENSSSCG00000021408
ENSG00000163931
Transketolase
Tissue enhanced
Detected in all
cornea:
113.9
TMBIM1
ENSSSCG00000016186
ENSG00000135926
Transmembrane BAX inhibitor motif containing 1
Low tissue specificity
Detected in all
TMEM129
ENSSSCG00000008678
ENSG00000168936
Transmembrane protein 129
Low tissue specificity
Detected in all
TMEM18
ENSSSCG00000036880
ENSG00000151353
Transmembrane protein 18
Low tissue specificity
Detected in all
TMEM259
ENSSSCG00000027779
ENSG00000182087
Transmembrane protein 259
Low tissue specificity
Detected in all
TMUB1
ENSSSCG00000028266
ENSG00000164897
Transmembrane and ubiquitin-like domain-containing protein 1
Low tissue specificity
Detected in all
TOM1
ENSSSCG00000038943
ENSG00000100284
Target of myb1 membrane trafficking protein
Low tissue specificity
Detected in all
TOMM34
ENSSSCG00000007383
ENSG00000025772
Mitochondrial import receptor subunit TOM34
Tissue enhanced
Detected in all
lens:
31.9
testis:
33.1
TOR1AIP1
ENSSSCG00000032621
ENSG00000143337
Torsin 1A interacting protein 1
Low tissue specificity
Detected in all
TPP1
ENSSSCG00000023080
ENSG00000166340
Tripeptidyl peptidase 1
Low tissue specificity
Detected in all
TRIM28
ENSSSCG00000037920
ENSG00000130726
Tripartite motif containing 28
Tissue enhanced
Detected in all
testis:
76.0
TRIM3
ENSSSCG00000014625
ENSG00000110171
Tripartite motif containing 3
Low tissue specificity
Detected in all
TRIM62
ENSSSCG00000003620
ENSG00000116525
Tripartite motif containing 62
Low tissue specificity
Detected in all
TRIO
ENSSSCG00000016781
ENSG00000038382
Trio Rho guanine nucleotide exchange factor
Low tissue specificity
Detected in all
TRMT2A
ENSSSCG00000010136
ENSG00000099899
TRNA methyltransferase 2 homolog A
Low tissue specificity
Detected in all
TSC2
ENSSSCG00000008040
ENSG00000103197
TSC complex subunit 2
Low tissue specificity
Detected in all
TSEN34
ENSSSCG00000003268
ENSG00000170892
TRNA splicing endonuclease subunit 34
Low tissue specificity
Detected in all
TSPO
ENSSSCG00000000033
ENSG00000100300
Translocator protein
Low tissue specificity
Detected in many
TSSC4
ENSSSCG00000036015
ENSG00000184281
Tumor suppressing subtransferable candidate 4
Low tissue specificity
Detected in all
TSTD2
ENSSSCG00000005367
ENSG00000136925
Thiosulfate sulfurtransferase like domain containing 2
Low tissue specificity
Detected in all
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