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Human disease related genes
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UMAP gene cluster
Pig tissue group category (RNA)
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Other congenital disorders
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Subclass
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Keyword
Chromosome
1
2
3
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5
6
7
8
9
10
11
12
13
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MT
Unmapped
X
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
Cartilage
Heart
Kidney
Large intestine
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Skin
Small intestine
Stomach 1
Upper respiratory system
Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
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TISSUE SPECIFIC PROTEOME
UMAP GENE CLUSTERING
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2285 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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1.
Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
DHX29
ENSSSCG00000016907
ENSG00000067248
DExH-box helicase 29
Tissue enhanced
Detected in all
lens:
55.5
DHX33
ENSSSCG00000039064
ENSG00000005100
DEAH-box helicase 33
Low tissue specificity
Detected in all
DHX34
ENSSSCG00000003114
ENSG00000134815
DExH-box helicase 34
Low tissue specificity
Detected in all
DHX35
ENSSSCG00000007352
ENSG00000101452
DEAH-box helicase 35
Low tissue specificity
Detected in all
DHX37
ENSSSCG00000009758
ENSG00000150990
DEAH-box helicase 37
Low tissue specificity
Detected in all
DHX8
ENSSSCG00000017378
ENSG00000067596
DEAH-box helicase 8
Low tissue specificity
Detected in all
DICER1
ENSSSCG00000028225
ENSG00000100697
Endoribonuclease Dicer
Low tissue specificity
Detected in all
DIDO1
ENSSSCG00000033946
ENSG00000101191
Death inducer-obliterator 1
Low tissue specificity
Detected in all
DIEXF
ENSSSCG00000015611
ENSG00000117597
Digestive organ expansion factor homolog (zebrafish)
Low tissue specificity
Detected in all
DIP2A
ENSSSCG00000035657
ENSG00000160305
Disco interacting protein 2 homolog A
Low tissue specificity
Detected in all
DIS3
ENSSSCG00000009460
ENSG00000083520
DIS3 homolog, exosome endoribonuclease and 3'-5' exoribonuclease
Low tissue specificity
Detected in all
DIS3L
ENSSSCG00000004941
ENSG00000166938
DIS3 like exosome 3'-5' exoribonuclease
Low tissue specificity
Detected in all
DIS3L2
ENSSSCG00000022177
ENSG00000144535
DIS3-like exonuclease 2
Tissue enhanced
Detected in all
male glands:
71.0
DKC1
ENSSSCG00000012823
ENSG00000130826
H/ACA ribonucleoprotein complex subunit 4
Low tissue specificity
Detected in all
DLST
ENSSSCG00000002374
ENSG00000119689
Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex, mitochondrial
Low tissue specificity
Detected in all
DMAC2
ENSSSCG00000032711
ENSG00000105341
Distal membrane arm assembly complex 2
Low tissue specificity
Detected in all
DNAAF2
ENSSSCG00000005007
ENSG00000165506
Dynein axonemal assembly factor 2
Low tissue specificity
Detected in all
DNAAF5
ENSSSCG00000007543
ENSG00000164818
Dynein axonemal assembly factor 5
Low tissue specificity
Detected in all
DNAJC13
ENSSSCG00000011628
ENSG00000138246
DnaJ heat shock protein family (Hsp40) member C13
Low tissue specificity
Detected in all
DNAJC17
ENSSSCG00000004762
ENSG00000104129
DnaJ heat shock protein family (Hsp40) member C17
Low tissue specificity
Detected in all
DNAJC21
ENSSSCG00000016828
ENSG00000168724
DnaJ heat shock protein family (Hsp40) member C21
Low tissue specificity
Detected in all
DNAJC25
ENSSSCG00000005460
ENSG00000059769
DnaJ heat shock protein family (Hsp40) member C25
Low tissue specificity
Detected in all
DNAJC9
ENSSSCG00000023482
ENSG00000213551
DnaJ heat shock protein family (Hsp40) member C9
Low tissue specificity
Detected in all
DNASE1L2
ENSSSCG00000024587
ENSG00000167968
Deoxyribonuclease 1 like 2
Low tissue specificity
Detected in many
DND1
ENSSSCG00000014374
ENSG00000256453
DND microRNA-mediated repression inhibitor 1
Low tissue specificity
Detected in all
DNMT3A
ENSSSCG00000029413
ENSG00000119772
DNA (cytosine-5)-methyltransferase 3A
Low tissue specificity
Detected in all
DNMT3B
ENSSSCG00000007252
ENSG00000088305
DNA methyltransferase 3 beta
Low tissue specificity
Detected in many
DNTTIP1
ENSSSCG00000007422
ENSG00000101457
Deoxynucleotidyltransferase terminal interacting protein 1
Low tissue specificity
Detected in all
DOPEY1
ENSSSCG00000004457
ENSG00000083097
Dopey family member 1
Low tissue specificity
Detected in all
DOT1L
ENSSSCG00000013457
ENSG00000104885
DOT1 like histone lysine methyltransferase
Tissue enhanced
Detected in all
testis:
58.9
DPH1
ENSSSCG00000017824
ENSG00000108963
Diphthamide biosynthesis 1
Low tissue specificity
Detected in all
DPH6
ENSSSCG00000035254
ENSG00000134146
Diphthamine biosynthesis 6
Low tissue specificity
Detected in all
DPH7
ENSSSCG00000031630
ENSG00000148399
Diphthamide biosynthesis 7
Low tissue specificity
Detected in all
DPP9
ENSSSCG00000026063
ENSG00000142002
Dipeptidyl peptidase 9
Low tissue specificity
Detected in all
DPYD
ENSSSCG00000006878
ENSG00000188641
Dihydropyrimidine dehydrogenase
Tissue enhanced
Detected in all
kidney:
52.3
liver:
46.7
DRC3
ENSSSCG00000037557
ENSG00000171962
Dynein regulatory complex subunit 3
Tissue enhanced
Detected in all
lung:
36.4
DRG2
ENSSSCG00000036328
ENSG00000108591
Developmentally regulated GTP binding protein 2
Low tissue specificity
Detected in all
DROSHA
ENSSSCG00000016809
ENSG00000113360
Drosha ribonuclease III
Low tissue specificity
Detected in all
DSN1
ENSSSCG00000007323
ENSG00000149636
Kinetochore-associated protein DSN1 homolog
Low tissue specificity
Detected in all
DTX2
ENSSSCG00000025430
ENSG00000091073
Deltex E3 ubiquitin ligase 2
Low tissue specificity
Detected in all
DUS1L
ENSSSCG00000040352
ENSG00000169718
Dihydrouridine synthase 1 like
Low tissue specificity
Detected in all
DUSP11
ENSSSCG00000008298
ENSG00000144048
Dual specificity phosphatase 11
Low tissue specificity
Detected in all
DVL1
ENSSSCG00000003342
ENSG00000107404
Dishevelled segment polarity protein 1
Low tissue specificity
Detected in all
DVL2
ENSSSCG00000025689
ENSG00000004975
Dishevelled segment polarity protein 2
Low tissue specificity
Detected in all
DYRK1B
ENSSSCG00000027197
ENSG00000105204
Dual specificity tyrosine phosphorylation regulated kinase 1B
Tissue enhanced
Detected in all
skeletal muscle:
71.1
DYRK2
ENSSSCG00000000958
ENSG00000127334
Dual specificity tyrosine phosphorylation regulated kinase 2
Low tissue specificity
Detected in all
E2F4
ENSSSCG00000002787
ENSG00000205250
E2F transcription factor 4
Low tissue specificity
Detected in all
E4F1
ENSSSCG00000008047
ENSG00000167967
E4F transcription factor 1
Low tissue specificity
Detected in all
ECHS1
ENSSSCG00000038086
ENSG00000127884
Enoyl-CoA hydratase, mitochondrial
Tissue enhanced
Detected in all
liver:
73.1
ECI1
ENSSSCG00000034338
ENSG00000167969
Enoyl-CoA delta isomerase 1, mitochondrial
Tissue enhanced
Detected in all
liver:
96.2
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