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Human disease related genes
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UMAP gene cluster
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Keyword
Chromosome
1
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7
8
9
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MT
Unmapped
X
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
Cartilage
Heart
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Lymphoid tissue
Male glands
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Skin
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Stomach 1
Upper respiratory system
Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
THE PIG ATLAS
TISSUE SPECIFIC PROTEOME
UMAP GENE CLUSTERING
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2285 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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1.
Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
ECI2
ENSSSCG00000001000
ENSG00000198721
Enoyl-CoA delta isomerase 2, mitochondrial
Tissue enhanced
Detected in all
liver:
61.0
EDEM1
ENSSSCG00000034197
ENSG00000134109
ER degradation enhancing alpha-mannosidase like protein 1
Tissue enhanced
Detected in all
lymphoid tissue:
66.0
EEF1AKMT3
ENSSSCG00000037619
ENSG00000123427
EEF1A lysine methyltransferase 3
Low tissue specificity
Detected in all
EEFSEC
ENSSSCG00000011619
ENSG00000132394
Eukaryotic elongation factor, selenocysteine-tRNA specific
Low tissue specificity
Detected in all
EFCAB11
ENSSSCG00000002430
ENSG00000140025
EF-hand calcium binding domain 11
Tissue enhanced
Detected in all
testis:
43.6
EFTUD2
ENSSSCG00000017346
ENSG00000108883
Elongation factor Tu GTP binding domain containing 2
Tissue enhanced
Detected in all
cornea:
73.5
lens:
69.9
EHMT1
ENSSSCG00000038437
ENSG00000181090
Euchromatic histone lysine methyltransferase 1
Low tissue specificity
Detected in all
EIF2A
ENSSSCG00000011710
ENSG00000144895
Eukaryotic translation initiation factor 2A
Low tissue specificity
Detected in all
EIF2AK4
ENSSSCG00000039061
ENSG00000128829
Eukaryotic translation initiation factor 2 alpha kinase 4
Low tissue specificity
Detected in all
EIF2B5
ENSSSCG00000011783
ENSG00000145191
Eukaryotic translation initiation factor 2B subunit epsilon
Low tissue specificity
Detected in all
EIF2S2
ENSSSCG00000026617
ENSG00000125977
Eukaryotic translation initiation factor 2 subunit beta
Low tissue specificity
Detected in all
EIF4E1B
ENSSSCG00000014052
ENSG00000175766
Eukaryotic translation initiation factor 4E family member 1B
Tissue enhanced
Detected in many
cartilage:
6.7
salivary gland:
10.2
EIF4ENIF1
ENSSSCG00000010030
ENSG00000184708
Eukaryotic translation initiation factor 4E nuclear import factor 1
Low tissue specificity
Detected in all
EIF5B
ENSSSCG00000008180
ENSG00000158417
Eukaryotic translation initiation factor 5B
Low tissue specificity
Detected in all
ELANE
ENSSSCG00000029130
ENSG00000197561
Elastase, neutrophil expressed
Tissue enriched
Detected in many
bone marrow:
70.9
ELK1
ENSSSCG00000012279
ENSG00000126767
ELK1, ETS transcription factor
Low tissue specificity
Detected in all
ELL
ENSSSCG00000040181
ENSG00000105656
Elongation factor for RNA polymerase II
Low tissue specificity
Detected in all
EME2
ENSSSCG00000021467
ENSG00000197774
Essential meiotic structure-specific endonuclease subunit 2
Tissue enhanced
Detected in many
cartilage:
24.1
EMSY
ENSSSCG00000014868
ENSG00000158636
EMSY, BRCA2 interacting transcriptional repressor
Low tissue specificity
Detected in all
ENDOG
ENSSSCG00000005661
ENSG00000167136
Endonuclease G
Low tissue specificity
Detected in all
ENDOV
ENSSSCG00000030277
ENSG00000173818
Endonuclease V
Low tissue specificity
Detected in all
ENOSF1
ENSSSCG00000027169
ENSG00000132199
Mitochondrial enolase superfamily member 1
Tissue enhanced
Detected in all
kidney:
42.8
ENOX2
ENSSSCG00000012663
ENSG00000165675
Ecto-NOX disulfide-thiol exchanger 2
Low tissue specificity
Detected in all
EP300
ENSSSCG00000000068
ENSG00000100393
E1A binding protein p300
Low tissue specificity
Detected in all
EPB41
ENSSSCG00000003586
ENSG00000159023
Erythrocyte membrane protein band 4.1
Group enriched
Detected in all
brain:
60.3
lens:
131.3
lymphoid tissue:
47.6
EPC1
ENSSSCG00000011028
ENSG00000120616
Enhancer of polycomb homolog 1
Low tissue specificity
Detected in all
EPG5
ENSSSCG00000021072
ENSG00000152223
Ectopic P-granules autophagy protein 5 homolog
Low tissue specificity
Detected in all
ERC1
ENSSSCG00000000755
ENSG00000082805
ELKS/RAB6-interacting/CAST family member 1
Low tissue specificity
Detected in all
ERCC2
ENSSSCG00000039929
ENSG00000104884
ERCC excision repair 2, TFIIH core complex helicase subunit
Tissue enhanced
Detected in all
retina:
46.7
ERCC3
ENSSSCG00000015721
ENSG00000163161
ERCC excision repair 3, TFIIH core complex helicase subunit
Low tissue specificity
Detected in all
ERCC5
ENSSSCG00000032046
ENSG00000134899
ERCC excision repair 5, endonuclease
Low tissue specificity
Detected in all
ERCC6
ENSSSCG00000010391
ENSG00000225830
ERCC excision repair 6, chromatin remodeling factor
Low tissue specificity
Detected in all
ERMARD
ENSSSCG00000004010
ENSG00000130023
ER membrane associated RNA degradation
Low tissue specificity
Detected in all
ERN1
ENSSSCG00000017279
ENSG00000178607
Endoplasmic reticulum to nucleus signaling 1
Tissue enhanced
Detected in all
male glands:
88.8
salivary gland:
39.2
ESCO1
ENSSSCG00000003700
ENSG00000141446
Establishment of sister chromatid cohesion N-acetyltransferase 1
Low tissue specificity
Detected in all
ESRRA
ENSSSCG00000013028
ENSG00000173153
Steroid hormone receptor ERR1
Tissue enhanced
Detected in all
male glands:
65.3
ETFDH
ENSSSCG00000008877
ENSG00000171503
Electron transfer flavoprotein dehydrogenase
Tissue enhanced
Detected in all
heart:
56.8
skeletal muscle:
62.0
ETV6
ENSSSCG00000024152
ENSG00000139083
ETS variant 6
Low tissue specificity
Detected in all
EWSR1
ENSSSCG00000009974
ENSG00000182944
RNA-binding protein EWS
Low tissue specificity
Detected in all
EXD3
ENSSSCG00000005855
ENSG00000187609
Exonuclease 3'-5' domain containing 3
Low tissue specificity
Detected in all
EXOC1
ENSSSCG00000023269
ENSG00000090989
Exocyst complex component 1
Low tissue specificity
Detected in all
EXOC2
ENSSSCG00000000985
ENSG00000112685
Exocyst complex component 2
Low tissue specificity
Detected in all
EXOC3
ENSSSCG00000039607
ENSG00000180104
Exocyst complex component 3
Low tissue specificity
Detected in all
EXOC3L4
ENSSSCG00000036871
ENSG00000205436
Exocyst complex component 3 like 4
Low tissue specificity
Detected in many
EXOC4
ENSSSCG00000016543
ENSG00000131558
Exocyst complex component 4
Low tissue specificity
Detected in all
EXOC7
ENSSSCG00000017190
ENSG00000182473
Exocyst complex component 7
Low tissue specificity
Detected in all
EXOG
ENSSSCG00000011258
ENSG00000157036
Exo/endonuclease G
Low tissue specificity
Detected in all
EXOSC10
ENSSSCG00000003412
ENSG00000171824
Exosome component 10
Low tissue specificity
Detected in all
EXOSC6
ENSSSCG00000002719
ENSG00000223496
Exosome component 6
Low tissue specificity
Detected in all
EYA2
ENSSSCG00000007453
ENSG00000064655
EYA transcriptional coactivator and phosphatase 2
Tissue enhanced
Detected in all
cartilage:
112.8
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