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Gene name
Human disease related genes
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UMAP gene cluster
Pig tissue group category (RNA)
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Gene name
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Cancers
Cardiovascular diseases
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Other congenital disorders
Other diseases
Reproductive system diseases
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Subclass
Class
Biological process
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Disease
Keyword
Chromosome
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
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18
MT
Unmapped
X
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
Cartilage
Heart
Kidney
Large intestine
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Skin
Small intestine
Stomach 1
Upper respiratory system
Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
THE PIG ATLAS
TISSUE SPECIFIC PROTEOME
UMAP GENE CLUSTERING
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2285 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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1.
Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
CUTC
ENSSSCG00000010542
ENSG00000119929
CutC copper transporter
Low tissue specificity
Detected in all
CUX1
ENSSSCG00000007681
ENSG00000257923
Cut like homeobox 1
Low tissue specificity
Detected in all
CWC22
ENSSSCG00000016008
ENSG00000163510
CWC22 spliceosome associated protein homolog
Low tissue specificity
Detected in all
CWC25
ENSSSCG00000021478
ENSG00000273559
Pre-mRNA-splicing factor CWC25 homolog
Low tissue specificity
Detected in all
CWF19L2
ENSSSCG00000028201
ENSG00000152404
CWF19-like protein 2
Low tissue specificity
Detected in all
CXCR6
ENSSSCG00000011318
ENSG00000172215
C-X-C chemokine receptor type 6
Tissue enhanced
Detected in all
skeletal muscle:
30.1
CXXC1
ENSSSCG00000004517
ENSG00000154832
CXXC finger protein 1
Low tissue specificity
Detected in all
CYB561D1
ENSSSCG00000006827
ENSG00000174151
Cytochrome b561 family member D1
Tissue enhanced
Detected in all
male glands:
43.6
CYP39A1
ENSSSCG00000001718
ENSG00000146233
Sus scrofa 24-hydroxycholesterol 7-alpha-hydroxylase-like (LOC100738724), mRNA.
Low tissue specificity
Detected in all
D2HGDH
ENSSSCG00000034101
ENSG00000180902
Galactose-3-O-sulfotransferase 2
Low tissue specificity
Detected in all
DAGLB
ENSSSCG00000027288
ENSG00000164535
Diacylglycerol lipase beta
Low tissue specificity
Detected in all
DAP3
ENSSSCG00000006507
ENSG00000132676
Death associated protein 3
Low tissue specificity
Detected in all
DAPK1
ENSSSCG00000010949
ENSG00000196730
Death associated protein kinase 1
Low tissue specificity
Detected in all
DAPL1
ENSSSCG00000015879
ENSG00000163331
Death-associated protein-like 1
Group enriched
Detected in some
cornea:
129.1
lens:
209.3
DAXX
ENSSSCG00000001509
ENSG00000204209
Death domain associated protein
Low tissue specificity
Detected in all
DAZAP1
ENSSSCG00000022528
ENSG00000071626
DAZ-associated protein 1
Low tissue specificity
Detected in all
DCAF1
ENSSSCG00000011417
ENSG00000145041
DDB1 and CUL4 associated factor 1
Low tissue specificity
Detected in all
DCAF10
ENSSSCG00000005356
ENSG00000122741
DDB1 and CUL4 associated factor 10
Low tissue specificity
Detected in all
DCAF15
ENSSSCG00000013763
ENSG00000132017
DDB1 and CUL4 associated factor 15
Low tissue specificity
Detected in all
DDB2
ENSSSCG00000013243
ENSG00000134574
Damage specific DNA binding protein 2
Group enriched
Detected in all
cornea:
24.7
lens:
97.1
DDX10
ENSSSCG00000015011
ENSG00000178105
DEAD-box helicase 10
Low tissue specificity
Detected in all
DDX11
ENSSSCG00000000745
ENSG00000013573
DEAD/H-box helicase 11
Low tissue specificity
Detected in all
DDX17
ENSSSCG00000000104
ENSG00000100201
DEAD-box helicase 17
Low tissue specificity
Detected in all
DDX21
ENSSSCG00000010247
ENSG00000165732
DExD-box helicase 21
Low tissue specificity
Detected in all
DDX31
ENSSSCG00000005729
ENSG00000125485
DEAD-box helicase 31
Low tissue specificity
Detected in all
DDX39B
ENSSSCG00000001400
ENSG00000198563
Spliceosome RNA helicase DDX39B
Low tissue specificity
Detected in all
DDX41
ENSSSCG00000032642
ENSG00000183258
DEAD-box helicase 41
Low tissue specificity
Detected in all
DDX46
ENSSSCG00000026644
ENSG00000145833
Probable ATP-dependent RNA helicase DDX46
Low tissue specificity
Detected in all
DDX5
ENSSSCG00000032092
ENSG00000108654
DEAD-box helicase 5
Low tissue specificity
Detected in all
DDX50
ENSSSCG00000010246
ENSG00000107625
DExD-box helicase 50
Low tissue specificity
Detected in all
DDX51
ENSSSCG00000028735
ENSG00000185163
DEAD-box helicase 51
Low tissue specificity
Detected in all
DDX55
ENSSSCG00000009771
ENSG00000111364
DEAD-box helicase 55
Low tissue specificity
Detected in all
DDX59
ENSSSCG00000024444
ENSG00000118197
DEAD-box helicase 59
Low tissue specificity
Detected in all
DEDD2
ENSSSCG00000030182
ENSG00000160570
Death effector domain containing 2
Low tissue specificity
Detected in all
DEF6
ENSSSCG00000001538
ENSG00000023892
DEF6, guanine nucleotide exchange factor
Low tissue specificity
Detected in all
DEF8
ENSSSCG00000002640
ENSG00000140995
Differentially expressed in FDCP 8 homolog
Low tissue specificity
Detected in all
DEFB1
ENSSSCG00000029990
ENSG00000164825
Beta-defensin 1 precursor
Group enriched
Detected in many
kidney:
122.3
large intestine:
44.2
male glands:
106.3
DENND3
ENSSSCG00000030831
ENSG00000105339
DENN domain containing 3
Low tissue specificity
Detected in all
DENND4B
ENSSSCG00000006568
ENSG00000198837
DENN domain containing 4B
Low tissue specificity
Detected in all
DENND6B
ENSSSCG00000034272
ENSG00000205593
DENN domain containing 6B
Low tissue specificity
Detected in all
DERA
ENSSSCG00000000599
ENSG00000023697
Deoxyribose-phosphate aldolase
Low tissue specificity
Detected in all
DERL1
ENSSSCG00000033690
ENSG00000136986
Derlin-1
Low tissue specificity
Detected in all
DESI2
ENSSSCG00000010876
ENSG00000121644
Desumoylating isopeptidase 2
Low tissue specificity
Detected in all
DET1
ENSSSCG00000005103
ENSG00000140543
DET1, COP1 ubiquitin ligase partner
Low tissue specificity
Detected in all
DGAT1
ENSSSCG00000005918
ENSG00000185000
Diacylglycerol O-acyltransferase 1
Tissue enhanced
Detected in all
small intestine:
35.6
DGCR8
ENSSSCG00000010135
ENSG00000128191
Microprocessor complex subunit DGCR8
Low tissue specificity
Detected in all
DGKD
ENSSSCG00000009432
ENSG00000077044
Diacylglycerol kinase delta
Low tissue specificity
Detected in all
DGKQ
ENSSSCG00000027286
ENSG00000145214
Diacylglycerol kinase theta
Tissue enhanced
Detected in all
stomach:
31.0
DHX15
ENSSSCG00000008756
ENSG00000109606
Pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15
Low tissue specificity
Detected in all
DHX16
ENSSSCG00000001376
ENSG00000204560
Putative pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16
Low tissue specificity
Detected in all
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