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Gene name
Human disease related genes
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UMAP gene cluster
Pig tissue group category (RNA)
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Gene name
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Cancers
Cardiovascular diseases
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Endocrine and metabolic diseases
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Other congenital disorders
Other diseases
Reproductive system diseases
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Subclass
Class
Biological process
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Disease
Keyword
Chromosome
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
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18
MT
Unmapped
X
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
Cartilage
Heart
Kidney
Large intestine
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Skin
Small intestine
Stomach 1
Upper respiratory system
Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
THE PIG ATLAS
TISSUE SPECIFIC PROTEOME
UMAP GENE CLUSTERING
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2285 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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1.
Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
CLK3
ENSSSCG00000001904
ENSG00000179335
CDC like kinase 3
Low tissue specificity
Detected in all
CLK4
ENSSSCG00000014028
ENSG00000113240
CDC like kinase 4
Low tissue specificity
Detected in all
CLN6
ENSSSCG00000004957
ENSG00000128973
Ceroid-lipofuscinosis neuronal protein 6
Low tissue specificity
Detected in all
CLOCK
ENSSSCG00000008909
ENSG00000134852
Clock circadian regulator
Low tissue specificity
Detected in all
CLPTM1L
ENSSSCG00000017119
ENSG00000049656
CLPTM1 like
Low tissue specificity
Detected in all
CLUH
ENSSSCG00000017835
ENSG00000132361
Clustered mitochondria homolog
Low tissue specificity
Detected in all
CNDP2
ENSSSCG00000004870
ENSG00000133313
Cytosolic non-specific dipeptidase
Tissue enhanced
Detected in all
salivary gland:
76.0
CNNM3
ENSSSCG00000008201
ENSG00000168763
Cyclin and CBS domain divalent metal cation transport mediator 3
Low tissue specificity
Detected in all
CNOT1
ENSSSCG00000002799
ENSG00000125107
CCR4-NOT transcription complex subunit 1
Low tissue specificity
Detected in all
CNOT10
ENSSSCG00000032220
ENSG00000182973
CCR4-NOT transcription complex subunit 10
Low tissue specificity
Detected in all
CNOT2
ENSSSCG00000000502
ENSG00000111596
CCR4-NOT transcription complex subunit 2
Low tissue specificity
Detected in all
CNOT3
ENSSSCG00000003264
ENSG00000088038
CCR4-NOT transcription complex subunit 3
Low tissue specificity
Detected in all
CNOT4
ENSSSCG00000021354
ENSG00000080802
CCR4-NOT transcription complex subunit 4
Low tissue specificity
Detected in all
CNOT6L
ENSSSCG00000008989
ENSG00000138767
CCR4-NOT transcription complex subunit 6 like
Low tissue specificity
Detected in all
CNPY3
ENSSSCG00000001651
ENSG00000137161
Protein canopy homolog 3
Low tissue specificity
Detected in all
CNTROB
ENSSSCG00000017968
ENSG00000170037
Centrobin, centriole duplication and spindle assembly protein
Low tissue specificity
Detected in all
COASY
ENSSSCG00000017398
ENSG00000068120
Bifunctional coenzyme A synthase Phosphopantetheine adenylyltransferase Dephospho-CoA kinase
Low tissue specificity
Detected in all
COG1
ENSSSCG00000017248
ENSG00000166685
Component of oligomeric golgi complex 1
Low tissue specificity
Detected in all
COG2
ENSSSCG00000010183
ENSG00000135775
Component of oligomeric golgi complex 2
Low tissue specificity
Detected in all
COG5
ENSSSCG00000037556
ENSG00000164597
Component of oligomeric golgi complex 5
Tissue enhanced
Detected in all
lens:
49.9
COMMD3
ENSSSCG00000011082
ENSG00000148444
COMM domain containing 3
Low tissue specificity
Detected in all
COQ2
ENSSSCG00000009238
ENSG00000173085
Coenzyme Q2, polyprenyltransferase
Low tissue specificity
Detected in all
COX10
ENSSSCG00000018023
ENSG00000006695
COX10 homolog, cytochrome c oxidase assembly protein, heme A: farnesyltransferase
Low tissue specificity
Detected in all
CPA1
ENSSSCG00000016557
ENSG00000091704
Carboxypeptidase A1
Tissue enhanced
Detected in many
testis:
18.3
CPNE1
ENSSSCG00000007306
ENSG00000214078
Copine-1
Low tissue specificity
Detected in all
CPNE7
ENSSSCG00000031104
ENSG00000178773
Copine 7
Low tissue specificity
Detected in many
CPSF1
ENSSSCG00000005906
ENSG00000071894
Cleavage and polyadenylation specific factor 1
Low tissue specificity
Detected in all
CPSF4
ENSSSCG00000026896
ENSG00000160917
Cleavage and polyadenylation specific factor 4
Low tissue specificity
Detected in all
CPSF6
ENSSSCG00000038031
ENSG00000111605
Cleavage and polyadenylation specificity factor subunit 6
Low tissue specificity
Detected in all
CPSF7
ENSSSCG00000013083
ENSG00000149532
Cleavage and polyadenylation specific factor 7
Low tissue specificity
Detected in all
CRAMP1
ENSSSCG00000008026
ENSG00000007545
Cramped chromatin regulator homolog 1
Low tissue specificity
Detected in all
CRAT
ENSSSCG00000005671
ENSG00000095321
Carnitine O-acetyltransferase
Tissue enhanced
Detected in all
skeletal muscle:
122.7
CREBBP
ENSSSCG00000007951
ENSG00000005339
CREB binding protein
Low tissue specificity
Detected in all
CREBZF
ENSSSCG00000014907
ENSG00000137504
CREB/ATF bZIP transcription factor
Low tissue specificity
Detected in all
CRNKL1
ENSSSCG00000038587
ENSG00000101343
Crooked neck pre-mRNA splicing factor 1
Low tissue specificity
Detected in all
CRTC2
ENSSSCG00000006567
ENSG00000160741
CREB regulated transcription coactivator 2
Low tissue specificity
Detected in all
CRY1
ENSSSCG00000000164
ENSG00000008405
Cryptochrome circadian regulator 1
Tissue enhanced
Detected in all
cartilage:
44.8
CSAD
ENSSSCG00000000259
ENSG00000139631
Cysteine sulfinic acid decarboxylase
Tissue enhanced
Detected in all
adipose tissue:
59.2
CSKMT
ENSSSCG00000027847
ENSG00000214756
Citrate synthase lysine methyltransferase
Low tissue specificity
Detected in many
CSNK1G1
ENSSSCG00000004558
ENSG00000169118
Casein kinase 1 gamma 1
Low tissue specificity
Detected in all
CSNK2A2
ENSSSCG00000002804
ENSG00000070770
Casein kinase 2 alpha 2
Low tissue specificity
Detected in all
CSTF3
ENSSSCG00000040954
ENSG00000176102
Cleavage stimulation factor subunit 3
Low tissue specificity
Detected in all
CTBP1
ENSSSCG00000031302
ENSG00000159692
C-terminal binding protein 1
Low tissue specificity
Detected in all
CTC1
ENSSSCG00000026818
ENSG00000178971
CST telomere replication complex component 1
Low tissue specificity
Detected in all
CTCF
ENSSSCG00000024253
ENSG00000102974
Transcriptional repressor CTCF
Low tissue specificity
Detected in all
CTDP1
ENSSSCG00000005787
ENSG00000060069
CTD phosphatase subunit 1
Low tissue specificity
Detected in all
CTPS2
ENSSSCG00000012146
ENSG00000047230
CTP synthase 2
Low tissue specificity
Detected in all
CTR9
ENSSSCG00000013406
ENSG00000198730
CTR9 homolog, Paf1/RNA polymerase II complex component
Low tissue specificity
Detected in all
CTU2
ENSSSCG00000033920
ENSG00000174177
Cytosolic thiouridylase subunit 2
Low tissue specificity
Detected in all
CUL9
ENSSSCG00000030196
ENSG00000112659
Cullin 9
Low tissue specificity
Detected in all
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