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Gene name
Human disease related genes
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UMAP gene cluster
Pig tissue group category (RNA)
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Gene name
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Subclass
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Keyword
Chromosome
1
2
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5
6
7
8
9
10
11
12
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14
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MT
Unmapped
X
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
Cartilage
Heart
Kidney
Large intestine
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Skin
Small intestine
Stomach 1
Upper respiratory system
Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
THE PIG ATLAS
TISSUE SPECIFIC PROTEOME
UMAP GENE CLUSTERING
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2285 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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1.
Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
CDK3
ENSSSCG00000017193
ENSG00000250506
Cyclin dependent kinase 3
Tissue enhanced
Detected in many
liver:
19.1
CDK6
ENSSSCG00000040183
ENSG00000105810
Cyclin dependent kinase 6
Tissue enhanced
Detected in all
lymphoid tissue:
52.9
CDK9
ENSSSCG00000005621
ENSG00000136807
Cyclin-dependent kinase 9
Low tissue specificity
Detected in all
CDKAL1
ENSSSCG00000001080
ENSG00000145996
CDK5 regulatory subunit associated protein 1 like 1
Low tissue specificity
Detected in all
CDKN2AIP
ENSSSCG00000015779
ENSG00000168564
CDKN2A interacting protein
Low tissue specificity
Detected in all
CDRT4
ENSSSCG00000039792
ENSG00000239704
CMT1A duplicated region transcript 4
Tissue enhanced
Detected in many
epididymis:
18.5
testis:
33.6
CDYL
ENSSSCG00000000999
ENSG00000153046
Chromodomain Y like
Low tissue specificity
Detected in all
CEACAM20
ENSSSCG00000028218
ENSG00000273777
Carcinoembryonic antigen related cell adhesion molecule 20
Tissue enhanced
Detected in many
male glands:
22.7
thyroid gland:
12.9
CENPC
ENSSSCG00000008921
ENSG00000145241
Centromere protein C
Low tissue specificity
Detected in all
CENPQ
ENSSSCG00000001731
ENSG00000031691
Centromere protein Q
Low tissue specificity
Detected in all
CEP104
ENSSSCG00000003362
ENSG00000116198
Centrosomal protein 104
Low tissue specificity
Detected in all
CEP120
ENSSSCG00000014239
ENSG00000168944
Centrosomal protein 120
Low tissue specificity
Detected in all
CEP128
ENSSSCG00000002410
ENSG00000100629
Centrosomal protein 128
Low tissue specificity
Detected in all
CEP131
ENSSSCG00000017143
ENSG00000141577
Centrosomal protein 131
Tissue enhanced
Detected in all
cartilage:
35.2
CEP135
ENSSSCG00000022283
ENSG00000174799
Centrosomal protein 135
Low tissue specificity
Detected in all
CEP162
ENSSSCG00000004289
ENSG00000135315
Centrosomal protein 162
Low tissue specificity
Detected in all
CEP164
ENSSSCG00000015080
ENSG00000110274
Centrosomal protein 164
Tissue enriched
Detected in all
testis:
56.2
CEP250
ENSSSCG00000021138
ENSG00000126001
Centrosomal protein 250
Low tissue specificity
Detected in all
CEP290
ENSSSCG00000000926
ENSG00000198707
Centrosomal protein 290
Low tissue specificity
Detected in all
CEP295
ENSSSCG00000014946
ENSG00000166004
Centrosomal protein 295
Low tissue specificity
Detected in all
CEP350
ENSSSCG00000015531
ENSG00000135837
Centrosomal protein 350
Low tissue specificity
Detected in all
CEP83
ENSSSCG00000024563
ENSG00000173588
Centrosomal protein 83
Low tissue specificity
Detected in all
CEP89
ENSSSCG00000025152
ENSG00000121289
Centrosomal protein 89
Low tissue specificity
Detected in all
CEP95
ENSSSCG00000028925
ENSG00000258890
Centrosomal protein 95
Low tissue specificity
Detected in all
CERK
ENSSSCG00000038763
ENSG00000100422
Ceramide kinase
Low tissue specificity
Detected in all
CFLAR
ENSSSCG00000016101
ENSG00000003402
CASP8 and FADD-like apoptosis regulator
Low tissue specificity
Detected in all
CHD1
ENSSSCG00000014177
ENSG00000153922
Chromodomain helicase DNA binding protein 1
Low tissue specificity
Detected in all
CHD1L
ENSSSCG00000006701
ENSG00000131778
Chromodomain helicase DNA binding protein 1 like
Low tissue specificity
Detected in all
CHD2
ENSSSCG00000002266
ENSG00000173575
Chromodomain helicase DNA binding protein 2
Low tissue specificity
Detected in all
CHD3
ENSSSCG00000021363
ENSG00000170004
Chromodomain helicase DNA binding protein 3
Low tissue specificity
Detected in all
CHD4
ENSSSCG00000000697
ENSG00000111642
Chromodomain helicase DNA binding protein 4
Low tissue specificity
Detected in all
CHD6
ENSSSCG00000007360
ENSG00000124177
Chromodomain helicase DNA binding protein 6
Low tissue specificity
Detected in all
CHD7
ENSSSCG00000006231
ENSG00000171316
Chromodomain helicase DNA binding protein 7
Low tissue specificity
Detected in all
CHD8
ENSSSCG00000002127
ENSG00000100888
Chromodomain helicase DNA binding protein 8
Low tissue specificity
Detected in all
CHERP
ENSSSCG00000013860
ENSG00000085872
Calcium homeostasis endoplasmic reticulum protein
Low tissue specificity
Detected in all
CHFR
ENSSSCG00000009732
ENSG00000072609
Checkpoint with forkhead and ring finger domains
Low tissue specificity
Detected in all
CHKB
ENSSSCG00000036154
ENSG00000100288
Choline/ethanolamine kinase
Low tissue specificity
Detected in all
CHPF2
ENSSSCG00000016436
ENSG00000033100
Chondroitin polymerizing factor 2
Low tissue specificity
Detected in all
CHRNB1
ENSSSCG00000030263
ENSG00000170175
Cholinergic receptor nicotinic beta 1 subunit
Low tissue specificity
Detected in all
CHTOP
ENSSSCG00000022107
ENSG00000160679
Chromatin target of PRMT1 protein
Low tissue specificity
Detected in all
CIC
ENSSSCG00000003030
ENSG00000079432
Capicua transcriptional repressor
Low tissue specificity
Detected in all
CIRBP
ENSSSCG00000013427
ENSG00000099622
Cold-inducible RNA-binding protein
Low tissue specificity
Detected in all
CIZ1
ENSSSCG00000005640
ENSG00000148337
CDKN1A interacting zinc finger protein 1
Low tissue specificity
Detected in all
CKS1B
ENSSSCG00000006538
ENSG00000160688
Cyclin-dependent kinases regulatory subunit 1
Tissue enriched
Detected in all
lens:
165.1
CLCN7
ENSSSCG00000008024
ENSG00000103249
Chloride voltage-gated channel 7
Low tissue specificity
Detected in all
CLDN20
ENSSSCG00000004067
ENSG00000171217
Claudin-20 precursor
Low tissue specificity
Detected in all
CLEC16A
ENSSSCG00000026569
ENSG00000038532
C-type lectin domain containing 16A
Low tissue specificity
Detected in all
CLIC2
ENSSSCG00000039998
ENSG00000155962
Chloride intracellular channel protein 2
Low tissue specificity
Detected in all
CLK1
ENSSSCG00000016095
ENSG00000013441
Dual specificity protein kinase CLK1
Low tissue specificity
Detected in all
CLK2
ENSSSCG00000006519
ENSG00000176444
CDC like kinase 2
Low tissue specificity
Detected in all
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