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Gene name
Human disease related genes
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UMAP gene cluster
Pig tissue group category (RNA)
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Gene name
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Cancers
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Other congenital disorders
Other diseases
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Subclass
Class
Biological process
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Disease
Keyword
Chromosome
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
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MT
Unmapped
X
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
Cartilage
Heart
Kidney
Large intestine
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Skin
Small intestine
Stomach 1
Upper respiratory system
Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
THE PIG ATLAS
TISSUE SPECIFIC PROTEOME
UMAP GENE CLUSTERING
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2285 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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1.
Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
CASC3
ENSSSCG00000017477
ENSG00000108349
Cancer susceptibility 3
Low tissue specificity
Detected in all
CASP8AP2
ENSSSCG00000004331
ENSG00000118412
Caspase 8 associated protein 2
Low tissue specificity
Detected in all
CASZ1
ENSSSCG00000003407
ENSG00000130940
Castor zinc finger 1
Tissue enhanced
Detected in many
skin:
52.2
CATSPERG
ENSSSCG00000002955
ENSG00000099338
Cation channel sperm associated auxiliary subunit gamma
Tissue enhanced
Detected in all
testis:
62.0
CBLL1
ENSSSCG00000028585
ENSG00000105879
Cbl proto-oncogene like 1
Low tissue specificity
Detected in all
CBX2
ENSSSCG00000024261
ENSG00000173894
Chromobox 2
Low tissue specificity
Detected in all
CC2D1A
ENSSSCG00000013761
ENSG00000132024
Coiled-coil and C2 domain-containing protein 1A
Low tissue specificity
Detected in all
CCAR1
ENSSSCG00000010243
ENSG00000060339
Cell division cycle and apoptosis regulator 1
Low tissue specificity
Detected in all
CCAR2
ENSSSCG00000009628
ENSG00000158941
Cell cycle and apoptosis regulator protein 2
Low tissue specificity
Detected in all
CCDC122
ENSSSCG00000009426
ENSG00000151773
Coiled-coil domain containing 122
Low tissue specificity
Detected in all
CCDC134
ENSSSCG00000035565
ENSG00000100147
Coiled-coil domain containing 134
Low tissue specificity
Detected in all
CCDC137
ENSSSCG00000034716
ENSG00000185298
Coiled-coil domain containing 137
Low tissue specificity
Detected in all
CCDC138
ENSSSCG00000008135
ENSG00000163006
Coiled-coil domain containing 138
Tissue enhanced
Detected in all
epididymis:
47.3
CCDC14
ENSSSCG00000025349
ENSG00000175455
Coiled-coil domain containing 14
Low tissue specificity
Detected in all
CCDC15
ENSSSCG00000015206
ENSG00000149548
Coiled-coil domain containing 15
Tissue enhanced
Detected in all
testis:
47.0
CCDC150
ENSSSCG00000016069
ENSG00000144395
Coiled-coil domain containing 150
Tissue enriched
Detected in all
testis:
63.2
CCDC154
ENSSSCG00000028139
ENSG00000197599
Coiled-coil domain containing 154
Tissue enhanced
Detected in many
male glands:
18.7
testis:
18.2
CCDC174
ENSSSCG00000040702
ENSG00000154781
Coiled-coil domain-containing protein 174
Low tissue specificity
Detected in all
CCDC183
ENSSSCG00000005830
ENSG00000213213
Coiled-coil domain containing 183
Tissue enhanced
Detected in many
male glands:
15.9
retina:
18.6
salivary gland:
43.4
testis:
27.7
CCDC186
ENSSSCG00000010648
ENSG00000165813
Coiled-coil domain containing 186
Low tissue specificity
Detected in all
CCDC191
ENSSSCG00000011913
ENSG00000163617
Coiled-coil domain containing 191
Low tissue specificity
Detected in all
CCDC61
ENSSSCG00000003100
ENSG00000104983
Coiled-coil domain containing 61
Low tissue specificity
Detected in all
CCDC77
ENSSSCG00000000751
ENSG00000120647
Coiled-coil domain containing 77
Low tissue specificity
Detected in all
CCDC84
ENSSSCG00000015102
ENSG00000186166
Coiled-coil domain-containing protein 84
Low tissue specificity
Detected in all
CCDC9
ENSSSCG00000024240
ENSG00000105321
Coiled-coil domain containing 9
Tissue enhanced
Detected in all
cartilage:
63.8
CCDC90B
ENSSSCG00000014903
ENSG00000137500
Coiled-coil domain containing 90B
Low tissue specificity
Detected in all
CCDC93
ENSSSCG00000015714
ENSG00000125633
Coiled-coil domain containing 93
Low tissue specificity
Detected in all
CCDC94
ENSSSCG00000013499
ENSG00000105248
Coiled-coil domain containing 94
Low tissue specificity
Detected in all
CCDC97
ENSSSCG00000003016
ENSG00000142039
Coiled-coil domain containing 97
Low tissue specificity
Detected in all
CCHCR1
ENSSSCG00000001391
ENSG00000204536
Coiled-coil alpha-helical rod protein 1
Tissue enriched
Detected in many
testis:
62.1
CCNJ
ENSSSCG00000010502
ENSG00000107443
Cyclin J
Low tissue specificity
Detected in all
CCNK
ENSSSCG00000002509
ENSG00000090061
Cyclin K
Low tissue specificity
Detected in all
CCNL1
ENSSSCG00000029352
ENSG00000163660
Cyclin L1
Low tissue specificity
Detected in all
CCNL2
ENSSSCG00000003354
ENSG00000221978
Cyclin L2
Low tissue specificity
Detected in all
CCNT1
ENSSSCG00000038181
ENSG00000129315
Cyclin T1
Low tissue specificity
Detected in all
CCS
ENSSSCG00000012934
ENSG00000173992
Copper chaperone for superoxide dismutase
Low tissue specificity
Detected in all
CD3G
ENSSSCG00000015094
ENSG00000160654
T-cell surface glycoprotein CD3 gamma chain
Tissue enhanced
Detected in all
lymphoid tissue:
57.1
CD79A
ENSSSCG00000033684
ENSG00000105369
B-cell antigen receptor complex-associated protein alpha chain precursor
Tissue enhanced
Detected in many
lymphoid tissue:
59.2
CDAN1
ENSSSCG00000004719
ENSG00000140326
Codanin 1
Low tissue specificity
Detected in all
CDC16
ENSSSCG00000020899
ENSG00000130177
Cell division cycle protein 16 homolog
Low tissue specificity
Detected in all
CDC42BPB
ENSSSCG00000002523
ENSG00000198752
CDC42 binding protein kinase beta
Low tissue specificity
Detected in all
CDC5L
ENSSSCG00000001708
ENSG00000096401
Cell division cycle 5 like
Low tissue specificity
Detected in all
CDC7
ENSSSCG00000027251
ENSG00000097046
Cell division cycle 7
Low tissue specificity
Detected in all
CDC73
ENSSSCG00000010801
ENSG00000134371
Cell division cycle 73
Low tissue specificity
Detected in all
CDCA4
ENSSSCG00000002559
ENSG00000170779
Cell division cycle associated 4
Low tissue specificity
Detected in many
CDCA7L
ENSSSCG00000015380
ENSG00000164649
Cell division cycle associated 7 like
Tissue enhanced
Detected in many
lymphoid tissue:
46.9
CDK12
ENSSSCG00000017504
ENSG00000167258
Cyclin dependent kinase 12
Low tissue specificity
Detected in all
CDK13
ENSSSCG00000016769
ENSG00000065883
Cyclin dependent kinase 13
Low tissue specificity
Detected in all
CDK18
ENSSSCG00000015290
ENSG00000117266
Cyclin dependent kinase 18
Tissue enhanced
Detected in all
heart:
55.0
CDK2
ENSSSCG00000000373
ENSG00000123374
Cyclin-dependent kinase 2
Tissue enhanced
Detected in many
lymphoid tissue:
27.2
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