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Gene name
Human disease related genes
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Within tissue variation
UMAP gene cluster
Pig tissue group category (RNA)
Pig brain category (RNA)
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Gene name
Class
Cancers
Cardiovascular diseases
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Digestive system diseases
Endocrine and metabolic diseases
Immune system diseases
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Other congenital disorders
Other diseases
Reproductive system diseases
Respiratory diseases
Skin diseases
Urinary system diseases
Subclass
Class
Biological process
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Disease
Keyword
Chromosome
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
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18
MT
Unmapped
X
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
Cartilage
Heart
Kidney
Large intestine
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Skin
Small intestine
Stomach 1
Upper respiratory system
Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
THE PIG ATLAS
TISSUE SPECIFIC PROTEOME
UMAP GENE CLUSTERING
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2285 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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1.
Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
2.
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
BPHL
ENSSSCG00000001008
ENSG00000137274
Valacyclovir hydrolase precursor
Low tissue specificity
Detected in all
BRAT1
ENSSSCG00000007563
ENSG00000106009
BRCA1 associated ATM activator 1
Low tissue specificity
Detected in all
BRD1
ENSSSCG00000032820
ENSG00000100425
Bromodomain containing 1
Low tissue specificity
Detected in all
BRD2
ENSSSCG00000001471
ENSG00000204256
Bromodomain-containing protein 2
Low tissue specificity
Detected in all
BRD3
ENSSSCG00000005749
ENSG00000169925
Bromodomain containing 3
Low tissue specificity
Detected in all
BRD4
ENSSSCG00000022227
ENSG00000141867
Bromodomain-containing protein 4
Low tissue specificity
Detected in all
BRD7
ENSSSCG00000021644
ENSG00000166164
Bromodomain containing 7
Low tissue specificity
Detected in all
BRD8
ENSSSCG00000014327
ENSG00000112983
Bromodomain containing 8
Low tissue specificity
Detected in all
BRD9
ENSSSCG00000035118
ENSG00000028310
Bromodomain containing 9
Low tissue specificity
Detected in all
BRF1
ENSSSCG00000031710
ENSG00000185024
BRF1, RNA polymerase III transcription initiation factor subunit
Low tissue specificity
Detected in all
BRMS1
ENSSSCG00000012939
ENSG00000174744
Breast cancer metastasis suppressor 1
Low tissue specificity
Detected in all
BRPF1
ENSSSCG00000011548
ENSG00000156983
Bromodomain and PHD finger containing 1
Low tissue specificity
Detected in all
BRPF3
ENSSSCG00000020803
ENSG00000096070
Bromodomain and PHD finger containing 3
Low tissue specificity
Detected in all
BRWD1
ENSSSCG00000021042
ENSG00000185658
Proteasome assembly chaperone 1
Tissue enhanced
Detected in all
lens:
98.6
BRWD3
ENSSSCG00000025156
ENSG00000165288
Bromodomain and WD repeat domain containing 3
Low tissue specificity
Detected in all
BTAF1
ENSSSCG00000010467
ENSG00000095564
B-TFIID TATA-box binding protein associated factor 1
Low tissue specificity
Detected in all
BTG1
ENSSSCG00000035790
ENSG00000133639
Protein BTG1
Low tissue specificity
Detected in all
BUD13
ENSSSCG00000015065
ENSG00000137656
BUD13 homolog
Low tissue specificity
Detected in all
C12orf75
ENSSSCG00000031661
ENSG00000235162
Chromosome 12 open reading frame 75
Low tissue specificity
Detected in many
C17orf50
ENSSSCG00000033580
ENSG00000270806
Chromosome 17 open reading frame 50
Low tissue specificity
Detected in many
C17orf53
ENSSSCG00000017364
ENSG00000125319
Chromosome 17 open reading frame 53
Tissue enriched
Detected in many
testis:
33.2
C17orf62
ENSSSCG00000017127
ENSG00000178927
Chromosome 17 open reading frame 62
Low tissue specificity
Detected in all
C17orf80
ENSSSCG00000017246
ENSG00000141219
Chromosome 17 open reading frame 80
Low tissue specificity
Detected in all
C19orf25
ENSSSCG00000022265
ENSG00000119559
Chromosome 19 open reading frame 25
Low tissue specificity
Detected in all
C19orf44
ENSSSCG00000013859
ENSG00000105072
Chromosome 19 open reading frame 44
Low tissue specificity
Detected in all
C19orf54
ENSSSCG00000040533
ENSG00000188493
Chromosome 19 open reading frame 54
Low tissue specificity
Detected in all
C19orf81
ENSSSCG00000037098
ENSG00000235034
Chromosome 19 open reading frame 81
Low tissue specificity
Detected in all
C1orf112
ENSSSCG00000006284
ENSG00000000460
Chromosome 1 open reading frame 112
Low tissue specificity
Detected in all
C1orf194
ENSSSCG00000033292
ENSG00000179902
Chromosome 1 open reading frame 194
Low tissue specificity
Detected in all
C1orf35
ENSSSCG00000013991
ENSG00000143793
Multiple myeloma tumor-associated protein 2
Low tissue specificity
Detected in all
C1orf53
ENSSSCG00000032380
ENSG00000203724
Chromosome 1 open reading frame 53
Low tissue specificity
Detected in all
C1orf74
ENSSSCG00000015613
ENSG00000162757
Chromosome 1 open reading frame 74
Low tissue specificity
Detected in all
C2CD3
ENSSSCG00000014835
ENSG00000168014
C2 calcium dependent domain containing 3
Low tissue specificity
Detected in all
C2orf15
ENSSSCG00000038761
ENSG00000273045
Chromosome 2 open reading frame 15
Low tissue specificity
Detected in all
C2orf68
ENSSSCG00000028287
ENSG00000168887
Chromosome 2 open reading frame 68
Low tissue specificity
Detected in all
C3orf67
ENSSSCG00000011482
ENSG00000163689
Chromosome 3 open reading frame 67
Low tissue specificity
Detected in all
C7orf43
ENSSSCG00000007647
ENSG00000146826
Chromosome 7 open reading frame 43
Low tissue specificity
Detected in all
C7orf49
ENSSSCG00000016531
ENSG00000122783
Chromosome 7 open reading frame 49
Low tissue specificity
Detected in all
C8orf82
ENSSSCG00000005895
ENSG00000213563
Chromosome 8 open reading frame 82
Tissue enhanced
Detected in all
testis:
65.2
CABIN1
ENSSSCG00000010062
ENSG00000099991
Calcineurin binding protein 1
Low tissue specificity
Detected in all
CABLES2
ENSSSCG00000007540
ENSG00000149679
Cdk5 and Abl enzyme substrate 2
Tissue enhanced
Detected in all
testis:
34.1
CACFD1
ENSSSCG00000040709
ENSG00000160325
Calcium channel flower domain containing 1
Tissue enhanced
Detected in all
stomach:
32.1
CACTIN
ENSSSCG00000032085
ENSG00000105298
Cactin, spliceosome C complex subunit
Low tissue specificity
Detected in all
CAD
ENSSSCG00000028978
ENSG00000084774
Carbamoyl-phosphate synthetase 2, aspartate transcarbamylase, and dihydroorotase
Low tissue specificity
Detected in all
CAGE1
ENSSSCG00000038886
ENSG00000164304
Cancer antigen 1
Tissue enhanced
Detected in all
testis:
33.6
CANT1
ENSSSCG00000038130
ENSG00000171302
Calcium activated nucleotidase 1
Low tissue specificity
Detected in all
CAPN15
ENSSSCG00000007993
ENSG00000103326
Calpain 15
Tissue enhanced
Detected in all
stomach:
57.6
CARM1
ENSSSCG00000013633
ENSG00000142453
Coactivator associated arginine methyltransferase 1
Low tissue specificity
Detected in all
CARS
ENSSSCG00000012857
ENSG00000110619
Cysteinyl-tRNA synthetase
Low tissue specificity
Detected in all
CARS2
ENSSSCG00000031757
ENSG00000134905
Cysteinyl-tRNA synthetase 2, mitochondrial
Low tissue specificity
Detected in all
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