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Human disease related genes
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UMAP gene cluster
Pig tissue group category (RNA)
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Keyword
Chromosome
1
2
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7
8
9
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MT
Unmapped
X
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
Cartilage
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Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Skin
Small intestine
Stomach 1
Upper respiratory system
Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
THE PIG ATLAS
TISSUE SPECIFIC PROTEOME
UMAP GENE CLUSTERING
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2285 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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1.
Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
2.
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
WDR20
ENSSSCG00000002533
ENSG00000140153
WD repeat domain 20
Low tissue specificity
Detected in all
WDR24
ENSSSCG00000008007
ENSG00000127580
WD repeat domain 24
Low tissue specificity
Detected in all
WDR26
ENSSSCG00000010849
ENSG00000162923
WD repeat domain 26
Low tissue specificity
Detected in all
WDR3
ENSSSCG00000006727
ENSG00000065183
WD repeat domain 3
Low tissue specificity
Detected in all
WDR33
ENSSSCG00000015861
ENSG00000136709
WD repeat domain 33
Low tissue specificity
Detected in all
WDR4
ENSSSCG00000023078
ENSG00000160193
WD repeat domain 4
Low tissue specificity
Detected in all
WDR43
ENSSSCG00000008536
ENSG00000163811
WD repeat domain 43
Low tissue specificity
Detected in all
WDR45B
ENSSSCG00000017133
ENSG00000141580
WD repeat domain phosphoinositide-interacting protein 3
Low tissue specificity
Detected in all
WDR46
ENSSSCG00000001504
ENSG00000227057
WD repeat domain 46
Low tissue specificity
Detected in all
WDR53
ENSSSCG00000036536
ENSG00000185798
WD repeat domain 53
Tissue enriched
Detected in all
testis:
58.9
WDR55
ENSSSCG00000032062
ENSG00000120314
WD repeat domain 55
Low tissue specificity
Detected in all
WDR59
ENSSSCG00000002714
ENSG00000103091
WD repeat domain 59
Low tissue specificity
Detected in all
WDR60
ENSSSCG00000038486
ENSG00000126870
WD repeat domain 60
Low tissue specificity
Detected in all
WDR62
ENSSSCG00000002923
ENSG00000075702
WD repeat-containing protein 62
Tissue enriched
Detected in all
testis:
55.3
WDR70
ENSSSCG00000016846
ENSG00000082068
WD repeat domain 70
Low tissue specificity
Detected in all
WDR74
ENSSSCG00000028025
ENSG00000133316
WD repeat-containing protein 74
Low tissue specificity
Detected in all
WDR76
ENSSSCG00000004695
ENSG00000092470
WD repeat domain 76
Tissue enhanced
Detected in all
lymphoid tissue:
35.9
WDR81
ENSSSCG00000040732
ENSG00000167716
WD repeat domain 81
Low tissue specificity
Detected in all
WDR83
ENSSSCG00000013722
ENSG00000123154
WD repeat domain 83
Low tissue specificity
Detected in all
WDR89
ENSSSCG00000005112
ENSG00000140006
WD repeat domain 89
Low tissue specificity
Detected in all
WDR97
ENSSSCG00000005916
ENSG00000179698
WD repeat domain 97
Low tissue specificity
Detected in all
WDTC1
ENSSSCG00000003570
ENSG00000142784
WD and tetratricopeptide repeats protein 1
Low tissue specificity
Detected in all
WHAMM
ENSSSCG00000001805
ENSG00000156232
WAS protein homolog associated with actin, golgi membranes and microtubules
Low tissue specificity
Detected in all
WRAP73
ENSSSCG00000003360
ENSG00000116213
WD repeat-containing protein WRAP73
Low tissue specificity
Detected in all
WTAP
ENSSSCG00000004050
ENSG00000146457
Pre-mRNA-splicing regulator WTAP isoform 1
Low tissue specificity
Detected in all
WWOX
ENSSSCG00000027415
ENSG00000186153
WW domain containing oxidoreductase
Low tissue specificity
Detected in all
XPC
ENSSSCG00000011602
ENSG00000154767
XPC complex subunit, DNA damage recognition and repair factor
Low tissue specificity
Detected in all
XPO4
ENSSSCG00000009276
ENSG00000132953
Exportin 4
Low tissue specificity
Detected in all
XRCC1
ENSSSCG00000003055
ENSG00000073050
X-ray repair cross complementing 1
Low tissue specificity
Detected in all
XRCC3
ENSSSCG00000002546
ENSG00000126215
X-ray repair cross complementing 3
Low tissue specificity
Detected in all
XRCC5
ENSSSCG00000016177
ENSG00000079246
X-ray repair cross complementing 5
Low tissue specificity
Detected in all
XRN2
ENSSSCG00000007109
ENSG00000088930
5'-3' exoribonuclease 2
Low tissue specificity
Detected in all
XRRA1
ENSSSCG00000021702
ENSG00000166435
X-ray radiation resistance associated 1
Low tissue specificity
Detected in all
YLPM1
ENSSSCG00000002372
ENSG00000119596
YLP motif containing 1
Low tissue specificity
Detected in all
YTHDC1
ENSSSCG00000035505
ENSG00000083896
YTH domain containing 1
Low tissue specificity
Detected in all
ZADH2
ENSSSCG00000032488
ENSG00000180011
Zinc binding alcohol dehydrogenase domain containing 2
Low tissue specificity
Detected in all
ZBED4
ENSSSCG00000035313
ENSG00000100426
Zinc finger BED-type containing 4
Low tissue specificity
Detected in all
ZBTB1
ENSSSCG00000023724
ENSG00000126804
Zinc finger and BTB domain containing 1
Tissue enhanced
Detected in all
lymphoid tissue:
40.9
ZBTB14
ENSSSCG00000033032
ENSG00000198081
Zinc finger and BTB domain containing 14
Low tissue specificity
Detected in all
ZBTB17
ENSSSCG00000026103
ENSG00000116809
Zinc finger and BTB domain containing 17
Low tissue specificity
Detected in all
ZBTB2
ENSSSCG00000004090
ENSG00000181472
Zinc finger and BTB domain containing 2
Low tissue specificity
Detected in all
ZBTB25
ENSSSCG00000039616
ENSG00000089775
Zinc finger and BTB domain containing 25
Low tissue specificity
Detected in all
ZBTB3
ENSSSCG00000037745
ENSG00000185670
Zinc finger and BTB domain containing 3
Low tissue specificity
Detected in all
ZBTB34
ENSSSCG00000031426
ENSG00000177125
Zinc finger and BTB domain containing 34
Low tissue specificity
Detected in all
ZBTB37
ENSSSCG00000015494
ENSG00000185278
Zinc finger and BTB domain containing 37
Low tissue specificity
Detected in all
ZBTB39
ENSSSCG00000037617
ENSG00000166860
Zinc finger and BTB domain containing 39
Low tissue specificity
Detected in all
ZBTB4
ENSSSCG00000026636
ENSG00000174282
Zinc finger and BTB domain containing 4
Low tissue specificity
Detected in all
ZBTB40
ENSSSCG00000026276
ENSG00000184677
Zinc finger and BTB domain containing 40
Low tissue specificity
Detected in all
ZBTB41
ENSSSCG00000010897
ENSG00000177888
Zinc finger and BTB domain containing 41
Low tissue specificity
Detected in all
ZBTB48
ENSSSCG00000003383
ENSG00000204859
Zinc finger and BTB domain containing 48
Low tissue specificity
Detected in all
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