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Human disease related genes
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UMAP gene cluster
Pig tissue group category (RNA)
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Gene name
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Other congenital disorders
Other diseases
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Subclass
Class
Biological process
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Disease
Keyword
Chromosome
1
2
3
4
5
6
7
8
9
10
11
12
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14
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MT
Unmapped
X
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
Cartilage
Heart
Kidney
Large intestine
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Skin
Small intestine
Stomach 1
Upper respiratory system
Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
THE PIG ATLAS
TISSUE SPECIFIC PROTEOME
UMAP GENE CLUSTERING
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2285 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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1.
Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
2.
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
UBR4
ENSSSCG00000003488
ENSG00000127481
Ubiquitin protein ligase E3 component n-recognin 4
Low tissue specificity
Detected in all
UBR5
ENSSSCG00000022479
ENSG00000104517
Ubiquitin protein ligase E3 component n-recognin 5
Low tissue specificity
Detected in all
UBTF
ENSSSCG00000017360
ENSG00000108312
Upstream binding transcription factor, RNA polymerase I
Low tissue specificity
Detected in all
UBXN8
ENSSSCG00000015843
ENSG00000104691
UBX domain-containing protein 8
Low tissue specificity
Detected in all
UFSP2
ENSSSCG00000015793
ENSG00000109775
UFM1 specific peptidase 2
Low tissue specificity
Detected in all
UGGT1
ENSSSCG00000015857
ENSG00000136731
UDP-glucose glycoprotein glucosyltransferase 1
Low tissue specificity
Detected in all
UHRF2
ENSSSCG00000005201
ENSG00000147854
Ubiquitin like with PHD and ring finger domains 2
Low tissue specificity
Detected in all
UIMC1
ENSSSCG00000022508
ENSG00000087206
BRCA1-A complex subunit RAP80
Tissue enhanced
Detected in all
testis:
58.1
ULK3
ENSSSCG00000001898
ENSG00000140474
Unc-51 like kinase 3
Low tissue specificity
Detected in all
UNC13D
ENSSSCG00000017200
ENSG00000092929
Unc-13 homolog D
Tissue enhanced
Detected in many
lymphoid tissue:
37.8
UNG
ENSSSCG00000009938
ENSG00000076248
Uracil DNA glycosylase
Tissue enhanced
Detected in all
male glands:
52.5
UNK
ENSSSCG00000017201
ENSG00000132478
Unkempt family zinc finger
Low tissue specificity
Detected in all
UPF1
ENSSSCG00000039301
ENSG00000005007
UPF1, RNA helicase and ATPase
Low tissue specificity
Detected in all
UPF3B
ENSSSCG00000012617
ENSG00000125351
UPF3B, regulator of nonsense mediated mRNA decay
Low tissue specificity
Detected in all
URB1
ENSSSCG00000032024
ENSG00000142207
URB1 ribosome biogenesis 1 homolog (S. cerevisiae)
Low tissue specificity
Detected in all
USF3
ENSSSCG00000011918
ENSG00000176542
Basic helix-loop-helix domain-containing protein USF3
Low tissue specificity
Detected in all
USP1
ENSSSCG00000003820
ENSG00000162607
Ubiquitin specific peptidase 1
Tissue enhanced
Detected in all
testis:
58.7
USP19
ENSSSCG00000011375
ENSG00000172046
Ubiquitin carboxyl-terminal hydrolase 19
Low tissue specificity
Detected in all
USP20
ENSSSCG00000024341
ENSG00000136878
Ubiquitin specific peptidase 20
Low tissue specificity
Detected in all
USP24
ENSSSCG00000029633
ENSG00000162402
Ubiquitin specific peptidase 24
Low tissue specificity
Detected in all
USP3
ENSSSCG00000028737
ENSG00000140455
Ubiquitin specific peptidase 3
Low tissue specificity
Detected in all
USP36
ENSSSCG00000017165
ENSG00000055483
Ubiquitin specific peptidase 36
Low tissue specificity
Detected in all
USP37
ENSSSCG00000016194
ENSG00000135913
Ubiquitin specific peptidase 37
Low tissue specificity
Detected in all
USP4
ENSSSCG00000011382
ENSG00000114316
Ubiquitin carboxyl-terminal hydrolase 4
Low tissue specificity
Detected in all
USP40
ENSSSCG00000016306
ENSG00000085982
Ubiquitin specific peptidase 40
Low tissue specificity
Detected in all
USP42
ENSSSCG00000032705
ENSG00000106346
Ubiquitin specific peptidase 42
Low tissue specificity
Detected in all
USP48
ENSSSCG00000024197
ENSG00000090686
Ubiquitin specific peptidase 48
Low tissue specificity
Detected in all
USP6NL
ENSSSCG00000011120
ENSG00000148429
USP6 N-terminal like
Low tissue specificity
Detected in all
USP7
ENSSSCG00000007907
ENSG00000187555
Ubiquitin carboxyl-terminal hydrolase 7
Low tissue specificity
Detected in all
UTP3
ENSSSCG00000028466
ENSG00000132467
Something about silencing protein 10
Low tissue specificity
Detected in all
UVSSA
ENSSSCG00000037035
ENSG00000163945
UV stimulated scaffold protein A
Low tissue specificity
Detected in all
VAC14
ENSSSCG00000002729
ENSG00000103043
Vac14, PIKFYVE complex component
Low tissue specificity
Detected in all
VAV2
ENSSSCG00000005743
ENSG00000160293
Vav guanine nucleotide exchange factor 2
Low tissue specificity
Detected in many
VEZF1
ENSSSCG00000017623
ENSG00000136451
Vascular endothelial zinc finger 1
Low tissue specificity
Detected in all
VIRMA
ENSSSCG00000006100
ENSG00000164944
Vir like m6A methyltransferase associated
Low tissue specificity
Detected in all
VPS13B
ENSSSCG00000006071
ENSG00000132549
Vacuolar protein sorting 13 homolog B
Low tissue specificity
Detected in all
VPS13D
ENSSSCG00000003438
ENSG00000048707
Vacuolar protein sorting 13 homolog D
Low tissue specificity
Detected in all
VPS16
ENSSSCG00000007167
ENSG00000215305
VPS16, CORVET/HOPS core subunit
Low tissue specificity
Detected in all
VPS26C
ENSSSCG00000012063
ENSG00000157538
VPS26 endosomal protein sorting factor C
Low tissue specificity
Detected in all
VPS37B
ENSSSCG00000028889
ENSG00000139722
Vacuolar protein sorting-associated protein 37B
Low tissue specificity
Detected in all
VPS37C
ENSSSCG00000028762
ENSG00000167987
VPS37C, ESCRT-I subunit
Low tissue specificity
Detected in all
VPS39
ENSSSCG00000004731
ENSG00000166887
VPS39, HOPS complex subunit
Low tissue specificity
Detected in all
VPS4B
ENSSSCG00000004893
ENSG00000119541
Vacuolar protein sorting 4 homolog B
Low tissue specificity
Detected in all
VPS9D1
ENSSSCG00000022310
ENSG00000075399
VPS9 domain containing 1
Low tissue specificity
Detected in all
VRK3
ENSSSCG00000003204
ENSG00000105053
Vaccinia related kinase 3
Low tissue specificity
Detected in all
VTI1A
ENSSSCG00000032968
ENSG00000151532
Vesicle transport through interaction with t-SNAREs 1A
Low tissue specificity
Detected in all
VWA8
ENSSSCG00000029837
ENSG00000102763
Von Willebrand factor A domain containing 8
Low tissue specificity
Detected in all
WAC
ENSSSCG00000011013
ENSG00000095787
WW domain containing adaptor with coiled-coil
Low tissue specificity
Detected in all
WAPL
ENSSSCG00000010357
ENSG00000062650
WAPL cohesin release factor
Low tissue specificity
Detected in all
WDR18
ENSSSCG00000013423
ENSG00000065268
WD repeat domain 18
Low tissue specificity
Detected in all
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