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Gene name
Human disease related genes
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UMAP gene cluster
Pig tissue group category (RNA)
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Gene name
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Cancers
Cardiovascular diseases
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Other congenital disorders
Other diseases
Reproductive system diseases
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Subclass
Class
Biological process
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Disease
Keyword
Chromosome
1
2
3
4
5
6
7
8
9
10
11
12
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14
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MT
Unmapped
X
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
Cartilage
Heart
Kidney
Large intestine
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Skin
Small intestine
Stomach 1
Upper respiratory system
Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
THE PIG ATLAS
TISSUE SPECIFIC PROTEOME
UMAP GENE CLUSTERING
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2285 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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1.
Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
TRIP13
ENSSSCG00000034522
ENSG00000071539
Pachytene checkpoint protein 2 homolog
Low tissue specificity
Detected in all
TRIP4
ENSSSCG00000004552
ENSG00000103671
Thyroid hormone receptor interactor 4
Tissue enhanced
Detected in all
lens:
56.4
TRMT1
ENSSSCG00000013744
ENSG00000104907
TRNA (guanine(26)-N(2))-dimethyltransferase
Low tissue specificity
Detected in all
TRMT10B
ENSSSCG00000005354
ENSG00000165275
TRNA methyltransferase 10B
Low tissue specificity
Detected in all
TRMT13
ENSSSCG00000006869
ENSG00000122435
TRNA methyltransferase 13 homolog
Low tissue specificity
Detected in all
TRMT1L
ENSSSCG00000021393
ENSG00000121486
TRNA methyltransferase 1 like
Low tissue specificity
Detected in all
TRMT44
ENSSSCG00000033873
ENSG00000155275
TRNA methyltransferase 44 homolog
Low tissue specificity
Detected in all
TRMT61A
ENSSSCG00000034738
ENSG00000166166
TRNA methyltransferase 61A
Tissue enhanced
Detected in all
liver:
38.9
TRMU
ENSSSCG00000000007
ENSG00000100416
TRNA 5-methylaminomethyl-2-thiouridylate methyltransferase
Low tissue specificity
Detected in all
TRNAU1AP
ENSSSCG00000030284
ENSG00000180098
TRNA selenocysteine 1 associated protein 1
Low tissue specificity
Detected in all
TROVE2
ENSSSCG00000032055
ENSG00000116747
TROVE domain family member 2
Low tissue specificity
Detected in all
TRPM7
ENSSSCG00000004636
ENSG00000092439
Transient receptor potential cation channel subfamily M member 7
Low tissue specificity
Detected in all
TRPV1
ENSSSCG00000017863
ENSG00000196689
Transient receptor potential cation channel subfamily V member 1
Low tissue specificity
Detected in some
TRPV5
ENSSSCG00000016469
ENSG00000127412
Transient receptor potential cation channel subfamily V member 5
Tissue enhanced
Detected in many
lymphoid tissue:
22.1
male glands:
35.6
TRRAP
ENSSSCG00000007606
ENSG00000196367
Transformation/transcription domain associated protein
Low tissue specificity
Detected in all
TSEN2
ENSSSCG00000011580
ENSG00000154743
TRNA splicing endonuclease subunit 2
Low tissue specificity
Detected in all
TSSK4
ENSSSCG00000025470
ENSG00000139908
Testis-specific serine/threonine-protein kinase 4
Tissue enhanced
Detected in all
testis:
44.9
TTC13
ENSSSCG00000010180
ENSG00000143643
Tetratricopeptide repeat domain 13
Low tissue specificity
Detected in all
TTC14
ENSSSCG00000011767
ENSG00000163728
Tetratricopeptide repeat domain 14
Low tissue specificity
Detected in all
TTC16
ENSSSCG00000005616
ENSG00000167094
Tetratricopeptide repeat domain 16
Low tissue specificity
Detected in all
TTC17
ENSSSCG00000013284
ENSG00000052841
Tetratricopeptide repeat domain 17
Low tissue specificity
Detected in all
TTC19
ENSSSCG00000023747
ENSG00000011295
Tetratricopeptide repeat domain 19
Low tissue specificity
Detected in all
TTC31
ENSSSCG00000008275
ENSG00000115282
Tetratricopeptide repeat domain 31
Low tissue specificity
Detected in all
TTC4
ENSSSCG00000003844
ENSG00000243725
Tetratricopeptide repeat domain 4
Low tissue specificity
Detected in all
TTC7A
ENSSSCG00000008434
ENSG00000068724
Tetratricopeptide repeat domain 7A
Tissue enhanced
Detected in many
lymphoid tissue:
45.9
stomach:
47.9
TTF1
ENSSSCG00000005725
ENSG00000125482
Transcription termination factor 1
Low tissue specificity
Detected in all
TTI1
ENSSSCG00000007340
ENSG00000101407
TELO2 interacting protein 1
Low tissue specificity
Detected in all
TTI2
ENSSSCG00000015833
ENSG00000129696
TELO2 interacting protein 2
Low tissue specificity
Detected in all
TUBD1
ENSSSCG00000017669
ENSG00000108423
Tubulin delta 1
Low tissue specificity
Detected in all
TUBE1
ENSSSCG00000004423
ENSG00000074935
Tubulin epsilon 1
Low tissue specificity
Detected in all
TUBGCP3
ENSSSCG00000009553
ENSG00000126216
Tubulin gamma complex associated protein 3
Low tissue specificity
Detected in all
TUBGCP6
ENSSSCG00000000972
ENSG00000128159
Tubulin gamma complex associated protein 6
Low tissue specificity
Detected in all
TWISTNB
ENSSSCG00000025298
ENSG00000105849
DNA-directed RNA polymerase I subunit RPA43
Low tissue specificity
Detected in all
TWNK
ENSSSCG00000030428
ENSG00000107815
Twinkle mtDNA helicase
Low tissue specificity
Detected in all
TXLNA
ENSSSCG00000003617
ENSG00000084652
Taxilin alpha
Low tissue specificity
Detected in all
TXLNG
ENSSSCG00000040713
ENSG00000086712
Taxilin gamma
Low tissue specificity
Detected in all
TXNRD2
ENSSSCG00000010131
ENSG00000184470
Thioredoxin reductase 2, mitochondrial
Low tissue specificity
Detected in all
TYK2
ENSSSCG00000013648
ENSG00000105397
Non-receptor tyrosine-protein kinase TYK2
Low tissue specificity
Detected in all
TYW3
ENSSSCG00000003779
ENSG00000162623
TRNA wybutosine-synthesizing protein 3 homolog
Low tissue specificity
Detected in all
U2AF2
ENSSSCG00000034815
ENSG00000063244
Splicing factor U2AF 65 kDa subunit
Low tissue specificity
Detected in all
U2SURP
ENSSSCG00000011684
ENSG00000163714
U2 snRNP associated SURP domain containing
Low tissue specificity
Detected in all
UAP1L1
ENSSSCG00000040003
ENSG00000197355
UDP-N-acetylglucosamine pyrophosphorylase 1 like 1
Low tissue specificity
Detected in all
UBE2J1
ENSSSCG00000004317
ENSG00000198833
Ubiquitin-conjugating enzyme E2 J1
Low tissue specificity
Detected in all
UBE2S
ENSSSCG00000035344
ENSG00000108106
Ubiquitin conjugating enzyme E2 S
Low tissue specificity
Detected in all
UBE3D
ENSSSCG00000026346
ENSG00000118420
Ubiquitin protein ligase E3D
Low tissue specificity
Detected in many
UBN1
ENSSSCG00000007924
ENSG00000118900
Ubinuclein 1
Low tissue specificity
Detected in all
UBN2
ENSSSCG00000016510
ENSG00000157741
Ubinuclein 2
Low tissue specificity
Detected in all
UBP1
ENSSSCG00000011235
ENSG00000153560
Upstream binding protein 1
Low tissue specificity
Detected in all
UBR1
ENSSSCG00000004717
ENSG00000159459
Ubiquitin protein ligase E3 component n-recognin 1
Low tissue specificity
Detected in all
UBR2
ENSSSCG00000001641
ENSG00000024048
Ubiquitin protein ligase E3 component n-recognin 2
Low tissue specificity
Detected in all
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