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Gene name
Human disease related genes
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UMAP gene cluster
Pig tissue group category (RNA)
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Gene name
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Cancers
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Other congenital disorders
Other diseases
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Subclass
Class
Biological process
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Disease
Keyword
Chromosome
1
2
3
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5
6
7
8
9
10
11
12
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14
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18
MT
Unmapped
X
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
Cartilage
Heart
Kidney
Large intestine
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Skin
Small intestine
Stomach 1
Upper respiratory system
Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
THE PIG ATLAS
TISSUE SPECIFIC PROTEOME
UMAP GENE CLUSTERING
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2285 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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1.
Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
TMEM201
ENSSSCG00000003393
ENSG00000188807
Transmembrane protein 201
Low tissue specificity
Detected in all
TMEM225B
ENSSSCG00000034499
ENSG00000244219
Transmembrane protein 225B
Tissue enhanced
Detected in all
testis:
20.6
TMEM249
ENSSSCG00000005910
ENSG00000261587
Transmembrane protein 249
Tissue enriched
Detected in many
testis:
58.8
TMEM251
ENSSSCG00000002458
ENSG00000153485
Transmembrane protein 251
Tissue enhanced
Detected in all
male glands:
39.2
TMEM265
ENSSSCG00000035518
ENSG00000281991
Transmembrane protein 265
Low tissue specificity
Detected in all
TMEM39B
ENSSSCG00000032563
ENSG00000121775
Transmembrane protein 39B
Low tissue specificity
Detected in all
TMEM63A
ENSSSCG00000010854
ENSG00000196187
CSC1-like protein 1
Low tissue specificity
Detected in all
TMEM87A
ENSSSCG00000004730
ENSG00000103978
Transmembrane protein 87A
Tissue enhanced
Detected in all
male glands:
93.7
TMEM94
ENSSSCG00000034608
ENSG00000177728
Transmembrane protein 94
Low tissue specificity
Detected in all
TMF1
ENSSSCG00000011510
ENSG00000144747
TATA element modulatory factor 1
Low tissue specificity
Detected in all
TMUB2
ENSSSCG00000022837
ENSG00000168591
Transmembrane and ubiquitin like domain containing 2
Low tissue specificity
Detected in all
TNFRSF25
ENSSSCG00000040001
ENSG00000215788
TNF receptor superfamily member 25
Tissue enhanced
Detected in many
lymphoid tissue:
17.8
stomach:
15.8
TNIP2
ENSSSCG00000008691
ENSG00000168884
TNFAIP3 interacting protein 2
Low tissue specificity
Detected in all
TNPO3
ENSSSCG00000016572
ENSG00000064419
Transportin 3
Low tissue specificity
Detected in all
TNRC18
ENSSSCG00000022553
ENSG00000182095
Trinucleotide repeat containing 18
Low tissue specificity
Detected in all
TNRC6A
ENSSSCG00000038870
ENSG00000090905
Trinucleotide repeat containing 6A
Low tissue specificity
Detected in all
TNRC6B
ENSSSCG00000000078
ENSG00000100354
Trinucleotide repeat containing 6B
Low tissue specificity
Detected in all
TNRC6C
ENSSSCG00000034373
ENSG00000078687
Trinucleotide repeat containing 6C
Low tissue specificity
Detected in all
TOB1
ENSSSCG00000040773
ENSG00000141232
Protein Tob1
Tissue enhanced
Detected in all
skeletal muscle:
128.5
TONSL
ENSSSCG00000025116
ENSG00000160949
Tonsoku like, DNA repair protein
Low tissue specificity
Detected in all
TOP1
ENSSSCG00000007355
ENSG00000198900
DNA topoisomerase I
Low tissue specificity
Detected in all
TOP1MT
ENSSSCG00000006958
ENSG00000184428
DNA topoisomerase I mitochondrial
Low tissue specificity
Detected in all
TOP3A
ENSSSCG00000035839
ENSG00000177302
DNA topoisomerase III alpha
Low tissue specificity
Detected in all
TOP3B
ENSSSCG00000010078
ENSG00000100038
DNA topoisomerase III beta
Low tissue specificity
Detected in all
TOPORS
ENSSSCG00000011004
ENSG00000197579
TOP1 binding arginine/serine rich protein
Low tissue specificity
Detected in all
TOR1B
ENSSSCG00000005683
ENSG00000136816
Torsin family 1 member B
Low tissue specificity
Detected in all
TP23
ENSSSCG00000040242
Sus scrofa basic proline-rich protein (SL44-1), mRNA.
Tissue enriched
Detected in many
mouth:
49.3
TPP2
ENSSSCG00000009528
ENSG00000134900
Tripeptidyl peptidase 2
Low tissue specificity
Detected in all
TPR
ENSSSCG00000015576
ENSG00000047410
Translocated promoter region, nuclear basket protein
Low tissue specificity
Detected in all
TPRN
ENSSSCG00000036027
ENSG00000176058
Taperin
Tissue enhanced
Detected in all
stomach:
34.0
TRA2A
ENSSSCG00000015387
ENSG00000164548
Transformer-2 protein homolog alpha
Low tissue specificity
Detected in all
TRABD
ENSSSCG00000000974
ENSG00000170638
TraB domain containing
Low tissue specificity
Detected in all
TRADD
ENSSSCG00000036321
ENSG00000102871
TNFRSF1A associated via death domain
Low tissue specificity
Detected in all
TRAF2
ENSSSCG00000005838
ENSG00000127191
TNF receptor associated factor 2
Low tissue specificity
Detected in all
TRAF5
ENSSSCG00000021068
ENSG00000082512
TNF receptor associated factor 5
Low tissue specificity
Detected in all
TRAF7
ENSSSCG00000008043
ENSG00000131653
TNF receptor associated factor 7
Low tissue specificity
Detected in all
TRAPPC2L
ENSSSCG00000002646
ENSG00000167515
Trafficking protein particle complex 2 like
Low tissue specificity
Detected in all
TRDMT1
ENSSSCG00000021309
ENSG00000107614
TRNA (cytosine(38)-C(5))-methyltransferase
Low tissue specificity
Detected in all
TRERF1
ENSSSCG00000001639
ENSG00000124496
Transcriptional regulating factor 1
Tissue enhanced
Detected in all
skin:
39.0
TRIM11
ENSSSCG00000035985
ENSG00000154370
Tripartite motif containing 11
Low tissue specificity
Detected in all
TRIM24
ENSSSCG00000016518
ENSG00000122779
Tripartite motif containing 24
Tissue enhanced
Detected in all
epididymis:
77.8
TRIM26
ENSSSCG00000001233
ENSG00000234127
Tripartite motif-containing protein 26
Low tissue specificity
Detected in all
TRIM27
ENSSSCG00000001219
ENSG00000204713
Tripartite motif containing 27
Tissue enriched
Detected in all
male glands:
85.0
TRIM33
ENSSSCG00000006757
ENSG00000197323
Tripartite motif containing 33
Low tissue specificity
Detected in all
TRIM35
ENSSSCG00000033325
ENSG00000104228
Tripartite motif containing 35
Low tissue specificity
Detected in all
TRIM4
ENSSSCG00000007637
ENSG00000146833
Tripartite motif containing 4
Low tissue specificity
Detected in all
TRIM66
ENSSSCG00000014567
ENSG00000166436
Tripartite motif containing 66
Low tissue specificity
Detected in all
TRIM68
ENSSSCG00000014768
ENSG00000167333
Tripartite motif containing 68
Low tissue specificity
Detected in all
TRIP11
ENSSSCG00000002445
ENSG00000100815
Thyroid hormone receptor interactor 11
Low tissue specificity
Detected in all
TRIP12
ENSSSCG00000024373
ENSG00000153827
Thyroid hormone receptor interactor 12
Low tissue specificity
Detected in all
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