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Gene name
Human disease related genes
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UMAP gene cluster
Pig tissue group category (RNA)
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Gene name
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Cancers
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Other congenital disorders
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Subclass
Class
Biological process
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Disease
Keyword
Chromosome
1
2
3
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5
6
7
8
9
10
11
12
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14
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MT
Unmapped
X
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
Cartilage
Heart
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Large intestine
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Skin
Small intestine
Stomach 1
Upper respiratory system
Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
THE PIG ATLAS
TISSUE SPECIFIC PROTEOME
UMAP GENE CLUSTERING
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2285 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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1.
Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
TCF12
ENSSSCG00000004600
ENSG00000140262
Transcription factor 12
Tissue enhanced
Detected in all
lymphoid tissue:
84.4
TCF20
ENSSSCG00000032171
ENSG00000100207
Transcription factor 20
Low tissue specificity
Detected in all
TCF25
ENSSSCG00000036102
ENSG00000141002
Transcription factor 25
Low tissue specificity
Detected in all
TCF3
ENSSSCG00000013437
ENSG00000071564
Transcription factor 3
Low tissue specificity
Detected in all
TCHP
ENSSSCG00000009926
ENSG00000139437
Trichoplein keratin filament binding
Low tissue specificity
Detected in all
TCOF1
ENSSSCG00000014450
ENSG00000070814
Treacle ribosome biogenesis factor 1
Tissue enhanced
Detected in all
testis:
38.9
TDG
ENSSSCG00000000847
ENSG00000139372
Thymine DNA glycosylase
Low tissue specificity
Detected in all
TDRD3
ENSSSCG00000009449
ENSG00000083544
Tudor domain containing 3
Low tissue specificity
Detected in all
TEC
ENSSSCG00000008820
ENSG00000135605
Tec protein tyrosine kinase
Low tissue specificity
Detected in many
TEDC1
ENSSSCG00000040089
ENSG00000185347
Tubulin epsilon and delta complex 1
Low tissue specificity
Detected in all
TEDC2
ENSSSCG00000008055
ENSG00000162062
Tubulin epsilon and delta complex 2
Tissue enhanced
Detected in all
epididymis:
26.3
TELO2
ENSSSCG00000008022
ENSG00000100726
Telomere maintenance 2
Low tissue specificity
Detected in all
TEPSIN
ENSSSCG00000028593
ENSG00000167302
AP-4 complex accessory subunit tepsin
Low tissue specificity
Detected in all
TESK2
ENSSSCG00000003917
ENSG00000070759
Testis-specific kinase 2
Tissue enriched
Detected in all
lens:
130.5
TET2
ENSSSCG00000009157
ENSG00000168769
Tet methylcytosine dioxygenase 2
Low tissue specificity
Detected in all
TET3
ENSSSCG00000008292
ENSG00000187605
Tet methylcytosine dioxygenase 3
Tissue enhanced
Detected in all
stomach:
62.2
TEX10
ENSSSCG00000005389
ENSG00000136891
Testis expressed 10
Low tissue specificity
Detected in all
TEX22
ENSSSCG00000036444
ENSG00000226174
Testis expressed 22
Tissue enhanced
Detected in many
testis:
27.0
TFAP4
ENSSSCG00000040215
ENSG00000090447
Transcription factor AP-4
Low tissue specificity
Detected in all
TFCP2
ENSSSCG00000031206
ENSG00000135457
Transcription factor CP2
Low tissue specificity
Detected in all
TGDS
ENSSSCG00000009491
ENSG00000088451
TDP-glucose 4,6-dehydratase
Low tissue specificity
Detected in all
TGS1
ENSSSCG00000006251
ENSG00000137574
Trimethylguanosine synthase 1
Low tissue specificity
Detected in all
THADA
ENSSSCG00000008459
ENSG00000115970
THADA, armadillo repeat containing
Low tissue specificity
Detected in all
THAP3
ENSSSCG00000036876
ENSG00000041988
THAP domain containing 3
Low tissue specificity
Detected in all
THAP9
ENSSSCG00000009243
ENSG00000168152
THAP domain containing 9
Low tissue specificity
Detected in all
THOC1
ENSSSCG00000025653
ENSG00000079134
THO complex 1
Low tissue specificity
Detected in all
THOC2
ENSSSCG00000012639
ENSG00000125676
THO complex 2
Low tissue specificity
Detected in all
THOC6
ENSSSCG00000023315
ENSG00000131652
THO complex subunit 6 homolog
Low tissue specificity
Detected in all
THRAP3
ENSSSCG00000029954
ENSG00000054118
Thyroid hormone receptor associated protein 3
Low tissue specificity
Detected in all
THUMPD1
ENSSSCG00000024748
ENSG00000066654
THUMP domain-containing protein 1
Low tissue specificity
Detected in all
THUMPD2
ENSSSCG00000008470
ENSG00000138050
THUMP domain containing 2
Low tissue specificity
Detected in all
TIA1
ENSSSCG00000023409
ENSG00000116001
TIA1 cytotoxic granule associated RNA binding protein
Low tissue specificity
Detected in all
TICAM1
ENSSSCG00000024771
ENSG00000127666
TIR domain-containing adapter molecule 1
Tissue enhanced
Detected in many
liver:
34.9
stomach:
55.7
TINF2
ENSSSCG00000001994
ENSG00000092330
TERF1 interacting nuclear factor 2
Low tissue specificity
Detected in all
TJAP1
ENSSSCG00000001688
ENSG00000137221
Tight junction associated protein 1
Low tissue specificity
Detected in all
TLCD1
ENSSSCG00000038650
ENSG00000160606
TLC domain containing 1
Low tissue specificity
Detected in all
TLDC1
ENSSSCG00000002672
ENSG00000140950
TBC/LysM-associated domain containing 1
Tissue enhanced
Detected in all
esophagus:
25.5
male glands:
33.4
TLE2
ENSSSCG00000028995
ENSG00000065717
Transducin like enhancer of split 2
Tissue enhanced
Detected in many
male glands:
43.4
TLK2
ENSSSCG00000017301
ENSG00000146872
Tousled like kinase 2
Low tissue specificity
Detected in all
TMC1
ENSSSCG00000005266
ENSG00000165091
Transmembrane channel like 1
Tissue enhanced
Detected in many
epididymis:
15.6
fallopian tube:
16.3
testis:
11.7
TMCO4
ENSSSCG00000027489
ENSG00000162542
Transmembrane and coiled-coil domains 4
Low tissue specificity
Detected in many
TMCO6
ENSSSCG00000014370
ENSG00000113119
Transmembrane and coiled-coil domains 6
Low tissue specificity
Detected in all
TMEM104
ENSSSCG00000017230
ENSG00000109066
Transmembrane protein 104
Tissue enhanced
Detected in all
male glands:
34.1
TMEM120A
ENSSSCG00000021837
ENSG00000189077
Transmembrane protein 120A
Tissue enhanced
Detected in all
stomach:
47.9
TMEM123
ENSSSCG00000031170
ENSG00000152558
Transmembrane protein 123
Tissue enhanced
Detected in all
lens:
69.8
lymphoid tissue:
71.9
TMEM131L
ENSSSCG00000009007
ENSG00000121210
Transmembrane 131 like
Tissue enhanced
Detected in all
lymphoid tissue:
50.7
TMEM134
ENSSSCG00000012905
ENSG00000172663
Transmembrane protein 134
Low tissue specificity
Detected in all
TMEM164
ENSSSCG00000037670
ENSG00000157600
Transmembrane protein 164
Tissue enhanced
Detected in all
heart:
50.6
male glands:
56.1
TMEM165
ENSSSCG00000032234
ENSG00000134851
Transmembrane protein 165
Low tissue specificity
Detected in all
TMEM175
ENSSSCG00000038234
ENSG00000127419
Transmembrane protein 175
Tissue enhanced
Detected in all
testis:
45.7
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