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Gene name
Human disease related genes
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UMAP gene cluster
Pig tissue group category (RNA)
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Gene name
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Other congenital disorders
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Subclass
Class
Biological process
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Disease
Keyword
Chromosome
1
2
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5
6
7
8
9
10
11
12
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14
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MT
Unmapped
X
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
Cartilage
Heart
Kidney
Large intestine
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Skin
Small intestine
Stomach 1
Upper respiratory system
Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
THE PIG ATLAS
TISSUE SPECIFIC PROTEOME
UMAP GENE CLUSTERING
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2285 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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1.
Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
ASXL2
ENSSSCG00000008575
ENSG00000143970
Additional sex combs like 2, transcriptional regulator
Low tissue specificity
Detected in all
ATAD2B
ENSSSCG00000008591
ENSG00000119778
ATPase family, AAA domain containing 2B
Low tissue specificity
Detected in all
ATF6B
ENSSSCG00000001430
ENSG00000213676
Cyclic AMP-dependent transcription factor ATF-6 beta
Low tissue specificity
Detected in all
ATF7IP
ENSSSCG00000000612
ENSG00000171681
Activating transcription factor 7 interacting protein
Low tissue specificity
Detected in all
ATG14
ENSSSCG00000005058
ENSG00000126775
Autophagy related 14
Low tissue specificity
Detected in all
ATG16L1
ENSSSCG00000016300
ENSG00000085978
Autophagy-related protein 16-1 isoform 1
Low tissue specificity
Detected in all
ATG16L2
ENSSSCG00000014819
ENSG00000168010
Autophagy related 16 like 2
Tissue enhanced
Detected in all
cartilage:
41.2
ATG2A
ENSSSCG00000023890
ENSG00000110046
Autophagy-related protein 2 homolog A
Low tissue specificity
Detected in all
ATG4A
ENSSSCG00000012569
ENSG00000101844
Autophagy related 4A cysteine peptidase
Tissue enhanced
Detected in all
male glands:
36.5
ATG4D
ENSSSCG00000013645
ENSG00000130734
Cysteine protease ATG4D
Low tissue specificity
Detected in all
ATP11C
ENSSSCG00000012713
ENSG00000101974
ATPase phospholipid transporting 11C
Low tissue specificity
Detected in all
ATP13A1
ENSSSCG00000013930
ENSG00000105726
ATPase 13A1
Low tissue specificity
Detected in all
ATP4A
ENSSSCG00000002902
ENSG00000105675
Potassium-transporting ATPase alpha chain 1
Tissue enriched
Detected in many
stomach:
31.9
ATP6V0A2
ENSSSCG00000009766
ENSG00000185344
ATPase H+ transporting V0 subunit a2
Low tissue specificity
Detected in all
ATP7A
ENSSSCG00000012437
ENSG00000165240
ATPase copper transporting alpha
Low tissue specificity
Detected in all
ATR
ENSSSCG00000011679
ENSG00000175054
ATR serine/threonine kinase
Low tissue specificity
Detected in all
ATXN1
ENSSSCG00000001065
ENSG00000124788
Ataxin 1
Low tissue specificity
Detected in all
ATXN2
ENSSSCG00000009834
ENSG00000204842
Ataxin 2
Low tissue specificity
Detected in all
ATXN2L
ENSSSCG00000021845
ENSG00000168488
Ataxin 2 like
Tissue enhanced
Detected in all
testis:
137.6
ATXN7L1
ENSSSCG00000015432
ENSG00000146776
Ataxin 7 like 1
Low tissue specificity
Detected in all
ATXN7L2
ENSSSCG00000006828
ENSG00000162650
Ataxin 7 like 2
Low tissue specificity
Detected in all
AUTS2
ENSSSCG00000007727
ENSG00000158321
Autism susceptibility gene 2 protein
Tissue enhanced
Detected in many
cartilage:
165.4
male glands:
64.3
AVPR2
ENSSSCG00000012789
ENSG00000126895
Vasopressin V2 receptor
Tissue enhanced
Detected in many
ductus deferens:
10.9
kidney:
16.5
male glands:
19.8
AXIN1
ENSSSCG00000023204
ENSG00000103126
Axin 1
Low tissue specificity
Detected in all
B3GNT8
ENSSSCG00000032536
ENSG00000177191
UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 8
Tissue enhanced
Detected in many
kidney:
20.7
large intestine:
11.7
BAHCC1
ENSSSCG00000023045
ENSG00000266074
BAH domain and coiled-coil containing 1
Low tissue specificity
Detected in many
BAHD1
ENSSSCG00000004772
ENSG00000140320
Bromo adjacent homology domain containing 1
Low tissue specificity
Detected in all
BANP
ENSSSCG00000020678
ENSG00000172530
Protein BANP
Low tissue specificity
Detected in all
BAZ1B
ENSSSCG00000027342
ENSG00000009954
Bromodomain adjacent to zinc finger domain 1B
Low tissue specificity
Detected in all
BAZ2A
ENSSSCG00000000403
ENSG00000076108
Bromodomain adjacent to zinc finger domain 2A
Low tissue specificity
Detected in all
BAZ2B
ENSSSCG00000015882
ENSG00000123636
Bromodomain adjacent to zinc finger domain 2B
Low tissue specificity
Detected in all
BBX
ENSSSCG00000011943
ENSG00000114439
BBX, HMG-box containing
Low tissue specificity
Detected in all
BCAR3
ENSSSCG00000006893
ENSG00000137936
BCAR3, NSP family adaptor protein
Low tissue specificity
Detected in all
BCL2L11
ENSSSCG00000022322
ENSG00000153094
Bcl-2-like protein 11 isoform 1
Low tissue specificity
Detected in all
BCL2L12
ENSSSCG00000003177
ENSG00000126453
BCL2 like 12
Low tissue specificity
Detected in all
BCLAF1
ENSSSCG00000004163
ENSG00000029363
Bcl-2-associated transcription factor 1
Low tissue specificity
Detected in all
BCLAF3
ENSSSCG00000023334
ENSG00000173681
BCLAF1 and THRAP3 family member 3
Tissue enhanced
Detected in all
epididymis:
53.3
BCORL1
ENSSSCG00000012655
ENSG00000085185
BCL6 corepressor like 1
Low tissue specificity
Detected in all
BDP1
ENSSSCG00000016968
ENSG00000145734
B double prime 1, subunit of RNA polymerase III transcription initiation factor IIIB
Low tissue specificity
Detected in all
BEND7
ENSSSCG00000032984
ENSG00000165626
BEN domain containing 7
Low tissue specificity
Detected in all
BICRA
ENSSSCG00000022302
ENSG00000063169
BRD4 interacting chromatin remodeling complex associated protein
Low tissue specificity
Detected in all
BICRAL
ENSSSCG00000001646
ENSG00000112624
BRD4 interacting chromatin remodeling complex associated protein like
Low tissue specificity
Detected in all
BIN3
ENSSSCG00000009629
ENSG00000147439
Bridging integrator 3
Low tissue specificity
Detected in all
BIRC6
ENSSSCG00000008513
ENSG00000115760
Baculoviral IAP repeat containing 6
Low tissue specificity
Detected in all
BIVM
ENSSSCG00000009534
ENSG00000134897
Basic immunoglobulin-like variable motif-containing protein
Low tissue specificity
Detected in all
BLOC1S5
ENSSSCG00000040593
ENSG00000188428
Biogenesis of lysosome-related organelles complex 1 subunit 5
Low tissue specificity
Detected in all
BMF
ENSSSCG00000035284
ENSG00000104081
Bcl2 modifying factor
Low tissue specificity
Detected in all
BMS1
ENSSSCG00000010198
ENSG00000165733
BMS1, ribosome biogenesis factor
Low tissue specificity
Detected in all
BOD1L1
ENSSSCG00000008735
ENSG00000038219
Biorientation of chromosomes in cell division 1 like 1
Low tissue specificity
Detected in all
BOP1
ENSSSCG00000005920
ENSG00000261236
Block of proliferation 1
Low tissue specificity
Detected in all
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