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Gene name
Human disease related genes
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Within tissue variation
UMAP gene cluster
Pig tissue group category (RNA)
Pig brain category (RNA)
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Gene name
Class
Cancers
Cardiovascular diseases
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Endocrine and metabolic diseases
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Other congenital disorders
Other diseases
Reproductive system diseases
Respiratory diseases
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Subclass
Class
Biological process
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Disease
Keyword
Chromosome
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
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18
MT
Unmapped
X
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
Cartilage
Heart
Kidney
Large intestine
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Skin
Small intestine
Stomach 1
Upper respiratory system
Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
THE PIG ATLAS
TISSUE SPECIFIC PROTEOME
UMAP GENE CLUSTERING
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2285 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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1.
Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
STAG1
ENSSSCG00000011652
ENSG00000118007
Stromal antigen 1
Low tissue specificity
Detected in all
STK11
ENSSSCG00000013429
ENSG00000118046
Serine/threonine kinase 11
Low tissue specificity
Detected in all
STK11IP
ENSSSCG00000032964
ENSG00000144589
Serine/threonine kinase 11 interacting protein
Low tissue specificity
Detected in all
STK19
ENSSSCG00000001426
ENSG00000204344
Serine/threonine-protein kinase 19
Low tissue specificity
Detected in all
STK24
ENSSSCG00000009511
ENSG00000102572
Serine/threonine kinase 24
Low tissue specificity
Detected in all
STK36
ENSSSCG00000026964
ENSG00000163482
Serine/threonine kinase 36
Tissue enriched
Detected in all
testis:
65.2
STOML3
ENSSSCG00000009366
ENSG00000133115
Stomatin like 3
Tissue enhanced
Detected in all
fallopian tube:
39.0
STRADA
ENSSSCG00000017290
ENSG00000266173
STE20-related kinase adaptor alpha
Tissue enhanced
Detected in all
testis:
59.2
STRN3
ENSSSCG00000040657
ENSG00000196792
Striatin 3
Low tissue specificity
Detected in all
STRN4
ENSSSCG00000003104
ENSG00000090372
Striatin 4
Tissue enhanced
Detected in all
epididymis:
98.9
STX18
ENSSSCG00000038731
ENSG00000168818
Syntaxin 18
Tissue enhanced
Detected in all
endometrium:
55.9
SUFU
ENSSSCG00000010586
ENSG00000107882
SUFU negative regulator of hedgehog signaling
Tissue enhanced
Detected in all
epididymis:
70.9
SUGP1
ENSSSCG00000036970
ENSG00000105705
SURP and G-patch domain containing 1
Low tissue specificity
Detected in all
SUMF2
ENSSSCG00000007745
ENSG00000129103
Sulfatase modifying factor 2
Low tissue specificity
Detected in all
SUN1
ENSSSCG00000007544
ENSG00000164828
Sad1 and UNC84 domain containing 1
Low tissue specificity
Detected in all
SUPT20H
ENSSSCG00000009359
ENSG00000102710
SPT20 homolog, SAGA complex component
Low tissue specificity
Detected in all
SUPT5H
ENSSSCG00000023556
ENSG00000196235
SPT5 homolog, DSIF elongation factor subunit
Low tissue specificity
Detected in all
SURF6
ENSSSCG00000032106
ENSG00000148296
Surfeit 6
Low tissue specificity
Detected in all
SUV39H2
ENSSSCG00000011048
ENSG00000152455
Histone-lysine N-methyltransferase SUV39H2
Low tissue specificity
Detected in all
SWT1
ENSSSCG00000015569
ENSG00000116668
SWT1, RNA endoribonuclease homolog
Low tissue specificity
Detected in all
SYMPK
ENSSSCG00000003093
ENSG00000125755
Symplekin
Low tissue specificity
Detected in all
SYNCRIP
ENSSSCG00000004294
ENSG00000135316
Synaptotagmin binding cytoplasmic RNA interacting protein
Low tissue specificity
Detected in all
SYTL3
ENSSSCG00000004057
ENSG00000164674
Synaptotagmin like 3
Tissue enhanced
Detected in many
lymphoid tissue:
20.1
SZT2
ENSSSCG00000003941
ENSG00000198198
SZT2, KICSTOR complex subunit
Low tissue specificity
Detected in all
TAB1
ENSSSCG00000000087
ENSG00000100324
TGF-beta-activated kinase 1 and MAP3K7-binding protein 1
Low tissue specificity
Detected in all
TAB2
ENSSSCG00000004110
ENSG00000055208
TGF-beta activated kinase 1/MAP3K7 binding protein 2
Low tissue specificity
Detected in all
TAB3
ENSSSCG00000012203
ENSG00000157625
TGF-beta activated kinase 1 and MAP3K7 binding protein 3
Low tissue specificity
Detected in all
TAF15
ENSSSCG00000017707
ENSG00000270647
TATA-binding protein-associated factor 2N
Low tissue specificity
Detected in all
TAF1A
ENSSSCG00000010833
ENSG00000143498
TATA-box binding protein associated factor, RNA polymerase I subunit A
Low tissue specificity
Detected in all
TAF1C
ENSSSCG00000002680
ENSG00000103168
TATA-box binding protein associated factor, RNA polymerase I subunit C
Low tissue specificity
Detected in all
TAF1D
ENSSSCG00000038682
ENSG00000166012
TATA-box binding protein associated factor, RNA polymerase I subunit D
Low tissue specificity
Detected in all
TAF3
ENSSSCG00000011127
ENSG00000165632
TATA-box binding protein associated factor 3
Low tissue specificity
Detected in all
TAF4
ENSSSCG00000024694
ENSG00000130699
TATA-box binding protein associated factor 4
Low tissue specificity
Detected in all
TAF5
ENSSSCG00000010597
ENSG00000148835
TATA-box binding protein associated factor 5
Low tissue specificity
Detected in all
TAF6L
ENSSSCG00000020665
ENSG00000162227
TATA-box binding protein associated factor 6 like
Low tissue specificity
Detected in all
TAF8
ENSSSCG00000022224
ENSG00000137413
TATA-box binding protein associated factor 8
Low tissue specificity
Detected in all
TANGO6
ENSSSCG00000031767
ENSG00000103047
Transport and golgi organization 6 homolog
Low tissue specificity
Detected in all
TAOK2
ENSSSCG00000031967
ENSG00000149930
TAO kinase 2
Low tissue specificity
Detected in all
TARBP1
ENSSSCG00000010160
ENSG00000059588
TAR (HIV-1) RNA binding protein 1
Low tissue specificity
Detected in all
TATDN3
ENSSSCG00000015592
ENSG00000203705
TatD DNase domain containing 3
Low tissue specificity
Detected in all
TAZ
ENSSSCG00000039655
ENSG00000102125
Tafazzin
Low tissue specificity
Detected in all
TBC1D13
ENSSSCG00000005660
ENSG00000107021
TBC1 domain family member 13
Low tissue specificity
Detected in all
TBC1D2
ENSSSCG00000005376
ENSG00000095383
TBC1 domain family member 2
Low tissue specificity
Detected in all
TBC1D22B
ENSSSCG00000001577
ENSG00000065491
TBC1 domain family member 22B
Low tissue specificity
Detected in all
TBC1D8
ENSSSCG00000008169
ENSG00000204634
TBC1 domain family member 8
Low tissue specificity
Detected in many
TBC1D9B
ENSSSCG00000014014
ENSG00000197226
TBC1 domain family member 9B
Low tissue specificity
Detected in all
TBCD
ENSSSCG00000017136
ENSG00000141556
Tubulin-specific chaperone D
Low tissue specificity
Detected in all
TBX10
ENSSSCG00000034410
ENSG00000167800
T-box 10
Low tissue specificity
Detected in many
TBX6
ENSSSCG00000034774
ENSG00000149922
T-box 6
Low tissue specificity
Detected in all
TCERG1
ENSSSCG00000014416
ENSG00000113649
Transcription elongation regulator 1
Low tissue specificity
Detected in all
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