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Gene name
Human disease related genes
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UMAP gene cluster
Pig tissue group category (RNA)
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Gene name
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Cancers
Cardiovascular diseases
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Other congenital disorders
Other diseases
Reproductive system diseases
Respiratory diseases
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Subclass
Class
Biological process
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Disease
Keyword
Chromosome
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
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18
MT
Unmapped
X
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
Cartilage
Heart
Kidney
Large intestine
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Skin
Small intestine
Stomach 1
Upper respiratory system
Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
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TISSUE SPECIFIC PROTEOME
UMAP GENE CLUSTERING
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2285 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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1.
Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
2.
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
SMCHD1
ENSSSCG00000029030
ENSG00000101596
Structural maintenance of chromosomes flexible hinge domain containing 1
Low tissue specificity
Detected in all
SMG1
ENSSSCG00000032531
ENSG00000157106
SMG1, nonsense mediated mRNA decay associated PI3K related kinase
Tissue enhanced
Detected in all
lymphoid tissue:
73.5
SMG6
ENSSSCG00000017826
ENSG00000070366
SMG6, nonsense mediated mRNA decay factor
Low tissue specificity
Detected in all
SMG7
ENSSSCG00000015558
ENSG00000116698
SMG7, nonsense mediated mRNA decay factor
Low tissue specificity
Detected in all
SMG9
ENSSSCG00000003068
ENSG00000105771
SMG9, nonsense mediated mRNA decay factor
Low tissue specificity
Detected in all
SMPD2
ENSSSCG00000004408
ENSG00000135587
Sphingomyelin phosphodiesterase 2
Tissue enhanced
Detected in all
testis:
47.2
SMPD4
ENSSSCG00000010105
ENSG00000136699
Sphingomyelin phosphodiesterase 4
Low tissue specificity
Detected in all
SMUG1
ENSSSCG00000024221
ENSG00000123415
Single-strand-selective monofunctional uracil-DNA glycosylase 1
Low tissue specificity
Detected in all
SNAPC4
ENSSSCG00000038262
ENSG00000165684
Small nuclear RNA activating complex polypeptide 4
Low tissue specificity
Detected in all
SNAPC5
ENSSSCG00000038941
ENSG00000174446
SnRNA-activating protein complex subunit 5
Low tissue specificity
Detected in all
SNRPA
ENSSSCG00000002998
ENSG00000077312
U1 small nuclear ribonucleoprotein A
Low tissue specificity
Detected in all
SNRPA1
ENSSSCG00000005786
ENSG00000131876
Small nuclear ribonucleoprotein polypeptide A'
Low tissue specificity
Detected in all
SNW1
ENSSSCG00000022932
ENSG00000100603
SNW domain containing 1
Low tissue specificity
Detected in all
SNX29
ENSSSCG00000037232
ENSG00000048471
Sorting nexin 29
Low tissue specificity
Detected in all
SNX6
ENSSSCG00000040912
ENSG00000129515
Sorting nexin-6
Low tissue specificity
Detected in all
SON
ENSSSCG00000023674
ENSG00000159140
SON DNA binding protein
Low tissue specificity
Detected in all
SOS1
ENSSSCG00000008478
ENSG00000115904
SOS Ras/Rac guanine nucleotide exchange factor 1
Low tissue specificity
Detected in all
SOS2
ENSSSCG00000005015
ENSG00000100485
SOS Ras/Rho guanine nucleotide exchange factor 2
Low tissue specificity
Detected in all
SOX4
ENSSSCG00000001081
ENSG00000124766
SRY-box 4
Tissue enhanced
Detected in many
cartilage:
67.4
SP1
ENSSSCG00000000272
ENSG00000185591
Sp1 transcription factor
Low tissue specificity
Detected in all
SP2
ENSSSCG00000017516
ENSG00000167182
Sp2 transcription factor
Low tissue specificity
Detected in all
SP3
ENSSSCG00000015962
ENSG00000172845
Sp3 transcription factor
Low tissue specificity
Detected in all
SPATA46
ENSSSCG00000006343
ENSG00000171722
Spermatogenesis associated 46
Tissue enhanced
Detected in many
cartilage:
34.1
male glands:
35.5
testis:
44.0
SPATA5
ENSSSCG00000009084
ENSG00000145375
Spermatogenesis-associated protein 5
Low tissue specificity
Detected in all
SPATA5L1
ENSSSCG00000004671
ENSG00000171763
Spermatogenesis-associated protein 5-like protein 1
Low tissue specificity
Detected in all
SPEN
ENSSSCG00000034484
ENSG00000065526
Spen family transcriptional repressor
Low tissue specificity
Detected in all
SPICE1
ENSSSCG00000024663
ENSG00000163611
Spindle and centriole associated protein 1
Low tissue specificity
Detected in all
SPOUT1
ENSSSCG00000005662
ENSG00000198917
SPOUT domain containing methyltransferase 1
Low tissue specificity
Detected in all
SPPL2B
ENSSSCG00000013464
ENSG00000005206
Signal peptide peptidase like 2B
Low tissue specificity
Detected in all
SPRED2
ENSSSCG00000008357
ENSG00000198369
Sprouty related EVH1 domain containing 2
Low tissue specificity
Detected in all
SPRN
ENSSSCG00000032305
ENSG00000203772
Shadow of prion protein
Tissue enhanced
Detected in many
lymphoid tissue:
5.2
stomach:
4.1
SPRTN
ENSSSCG00000040087
ENSG00000010072
SprT-like domain-containing protein Spartan
Low tissue specificity
Detected in all
SPRYD4
ENSSSCG00000028066
ENSG00000176422
SPRY domain containing 4
Low tissue specificity
Detected in all
SPSB3
ENSSSCG00000039024
ENSG00000162032
SplA/ryanodine receptor domain and SOCS box containing 3
Low tissue specificity
Detected in all
SRBD1
ENSSSCG00000008445
ENSG00000068784
S1 RNA binding domain 1
Low tissue specificity
Detected in all
SREK1
ENSSSCG00000032726
ENSG00000153914
Splicing regulatory glutamic acid and lysine rich protein 1
Low tissue specificity
Detected in all
SRRM1
ENSSSCG00000032947
ENSG00000133226
Serine and arginine repetitive matrix 1
Low tissue specificity
Detected in all
SRRM2
ENSSSCG00000023304
ENSG00000167978
Serine/arginine repetitive matrix protein 2
Low tissue specificity
Detected in all
SRRT
ENSSSCG00000024789
ENSG00000087087
Serrate, RNA effector molecule
Low tissue specificity
Detected in all
SRSF1
ENSSSCG00000017626
ENSG00000136450
Serine/arginine-rich splicing factor 1
Low tissue specificity
Detected in all
SRSF10
ENSSSCG00000036293
ENSG00000188529
Serine/arginine-rich splicing factor 10 isoform 1
Low tissue specificity
Detected in all
SRSF11
ENSSSCG00000003791
ENSG00000116754
Serine/arginine-rich splicing factor 11
Low tissue specificity
Detected in all
SRSF2
ENSSSCG00000036592
ENSG00000161547
Serine/arginine-rich splicing factor 2
Low tissue specificity
Detected in all
SRSF3
ENSSSCG00000001564
ENSG00000112081
Serine and arginine rich splicing factor 3
Low tissue specificity
Detected in all
SRSF4
ENSSSCG00000003589
ENSG00000116350
Serine/arginine-rich splicing factor 4
Low tissue specificity
Detected in all
SRSF5
ENSSSCG00000032583
ENSG00000100650
Serine and arginine rich splicing factor 5
Low tissue specificity
Detected in all
SRSF6
ENSSSCG00000007362
ENSG00000124193
Serine/arginine-rich splicing factor 6
Low tissue specificity
Detected in all
SS18
ENSSSCG00000003716
ENSG00000141380
Protein SSXT
Low tissue specificity
Detected in all
SSH1
ENSSSCG00000009943
ENSG00000084112
Slingshot protein phosphatase 1
Low tissue specificity
Detected in all
ST3GAL1
ENSSSCG00000005943
ENSG00000008513
CMP-N-acetylneuraminate-beta-galactosamide-alpha-2, 3-sialyltransferase 1
Tissue enhanced
Detected in many
male glands:
52.0
small intestine:
51.7
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